Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C21
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    31   1.7  
03_05_0029 + 19992040-19992211,19992657-19992856                       30   3.0  
09_03_0014 - 11533365-11533470,11534201-11534747,11535019-11535091     29   4.0  
12_02_0044 - 12807372-12807555,12807782-12807840,12807943-128080...    29   6.9  
06_01_0326 + 2372176-2373057,2373146-2373610                           29   6.9  
04_04_0561 - 26250488-26251451,26251499-26251620                       28   9.2  
01_01_0855 - 6666854-6666969,6667107-6667230,6667679-6667849,666...    28   9.2  

>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 136  APVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDN 282
            +P  T   S PP     A L +P  +  YP  +N+    +G  ++SG N
Sbjct: 1399 SPAETSFSSPPPATQFSAPLMVPT-IQRYPSMDNITTPNNGSGLSSGSN 1446


>03_05_0029 + 19992040-19992211,19992657-19992856
          Length = 123

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 126 KWTSAGVDKDIVGAPDADRG 185
           +W S  +D  +VG+PDAD G
Sbjct: 80  RWVSVAIDVMVVGSPDADEG 99


>09_03_0014 - 11533365-11533470,11534201-11534747,11535019-11535091
          Length = 241

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 190 ELSLPCEVDGYPQPE-NVYWSKDGVRIASGDNIWISGTSVSR---LTIRRVTVGDSGVY 354
           +  L  +  GY   +  + +  DG  I +G+N   SG S +R   LT+RR   G+   Y
Sbjct: 30  DCGLEAKYSGYKDTDLGIVYVSDGPYIDNGENHQASGDSTTRRPYLTLRRFPTGERNCY 88


>12_02_0044 -
           12807372-12807555,12807782-12807840,12807943-12808072,
           12808160-12808224,12808318-12808506,12808574-12809119,
           12809258-12809497,12809598-12810032
          Length = 615

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 114 LACAKWTSAGVDKDIVGAPDADRGRRTESALRSGWV 221
           + C K++     + +VG PD   G   E A+  GWV
Sbjct: 25  IECFKYSRRATLRSVVGRPDGGAGLVGERAVVGGWV 60


>06_01_0326 + 2372176-2373057,2373146-2373610
          Length = 448

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +1

Query: 253 DGVRIASGDNIWISGTSVSRLTIRRVTVGDSGVYVCHADNLYSSHE 390
           DG+ +    NIWI   S+S  +   + + D    +  +++ ++ H+
Sbjct: 248 DGISVMGSSNIWIDHVSMSNCSDGLIDITDGSTAITISNSHFTKHD 293


>04_04_0561 - 26250488-26251451,26251499-26251620
          Length = 361

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +1

Query: 112 CWPARSGQAPVSTRILSAPPTLTAGAELSLPCEVD-GYPQPENVYWSKDGVRIASGDNIW 288
           C PA     P +  I ++PPT T    L L    D     P         +R ++    W
Sbjct: 31  CLPASRSFTPRTREIPTSPPTSTGDQLLRLALVADKAMAAPPPTATEDLAIRSSTRTEAW 90

Query: 289 ISGTSVSRLTIRRV 330
             GT+   + + RV
Sbjct: 91  FGGTTWKPVPVARV 104


>01_01_0855 -
           6666854-6666969,6667107-6667230,6667679-6667849,
           6668171-6668276,6668356-6668532,6669213-6669442
          Length = 307

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 293 LIHMLSPDAILTPSLDQYTFSG----CGYPSTSQGRLSSAPAVSVGGADNIL 150
           ++   SPD   + S   YT++G    C +   S G   S+PA+SVG + N++
Sbjct: 138 VVKATSPDG--SSSFTAYTYAGELPTCAFGFNSNGVRVSSPAMSVGHSYNLM 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,584,830
Number of Sequences: 37544
Number of extensions: 393997
Number of successful extensions: 1243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)