Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C20
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   3e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.011
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPP 649
           P PPP       PPPPPP         PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -3

Query: 744 PPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPP 649
           PPP        PPPPPP         PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 758 GGGXPPPPPXXXXXPXPPPPPP 693
           GG  PPPPP       PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 760 LGGXPPPPPXXXXXXXXPPPPP 695
           +GG PPPPP        PPPPP
Sbjct: 758 MGGPPPPPPPPGVAGAGPPPPP 779



 Score = 33.1 bits (72), Expect = 0.045
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPP---PPXXXFFFXXXPPPPPP 649
           PPPPP        P P   PP         PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 32.7 bits (71), Expect = 0.059
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPP---PXXXFFFXXXPPPPPP 649
           PPPPP       P P P   P         PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 32.3 bits (70), Expect = 0.078
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 758 GGGXPPPPPXXXXXPXPPPPPP 693
           G   PPPPP       PPPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 711 PPPPPPXXXFFFXXXPPPPPP 649
           PPPPPP   F     PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 33.5 bits (73), Expect = 0.034
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 758 GGGXPPPPPXXXXXPXPPPPPP 693
           G   PPPPP     P  PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28



 Score = 32.3 bits (70), Expect = 0.078
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPP 694
           PPPPP       PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 32.3 bits (70), Expect = 0.078
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 746 PPPPPXXXXXPXPPPPPP 693
           PPPPP       PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -3

Query: 711 PPPPPPXXXFFFXXXPPPPPPXXKKXXXXXXP 616
           PPPPPP         PPPPPP   K      P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -1

Query: 755 GGXPPPPPXXXXXPX---PPPPPP 693
           G  PPPPP     P    PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 0.96
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPP 694
           PPPP        PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 25/105 (23%), Positives = 28/105 (26%)
 Frame = -3

Query: 756 GGXPPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPPXXKKXXXXXXPXXFFXXXGGXXPX 577
           G   PPPP         PPPP           PPPP   +      P       G   P 
Sbjct: 256 GEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313

Query: 576 KXXXXXXXKXPPPXGXKXX*KKXXPPPPXXXXXKXTFXGGEKKXG 442
                   +  PP        +  PPPP          G E   G
Sbjct: 314 PPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRG 358



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/88 (25%), Positives = 25/88 (28%)
 Frame = -3

Query: 756 GGXPPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPPXXKKXXXXXXPXXFFXXXGGXXPX 577
           G   PPPP         PPPP           PPPP   +      P       G   P 
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261

Query: 576 KXXXXXXXKXPPPXGXKXX*KKXXPPPP 493
                   +  PP        +  PPPP
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/88 (25%), Positives = 25/88 (28%)
 Frame = -3

Query: 756 GGXPPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPPXXKKXXXXXXPXXFFXXXGGXXPX 577
           G   PPPP         PPPP           PPPP   +      P       G   P 
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274

Query: 576 KXXXXXXXKXPPPXGXKXX*KKXXPPPP 493
                   +  PP        +  PPPP
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPP 302


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPP 649
           PPPPP          PPP         PP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPP 649
           PPPPP         P PP         PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQG----RSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/85 (24%), Positives = 22/85 (25%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPPXXKKXXXXXXPXXFFXXXGGXXPXKXX 568
           PPPPP       PP             PPPPPP          P           P    
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSN--SSLPPPPPPPRSNAAGSIPLPPQ--GRSAPPPPPPRS 368

Query: 567 XXXXXKXPPPXGXKXX*KKXXPPPP 493
                + PPP            PPP
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPP 393


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 747  PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPPP 649
            PPPPP       PPP  P         PPPP P
Sbjct: 1707 PPPPPMSVP---PPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -3

Query: 747  PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPPP 652
            P PPP       PP  PP         PPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 746  PPPPPXXXXXPXPPPPPP 693
            P PPP     P PP  PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -3

Query: 747 PPPPPXXXXXXXPPPPPPXXXFFFXXXPPPP 655
           PP P         PPPPP         PP P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 694 GGGGGGXGXXXXXGGGGGXPPP 759
           G  GGG G     GGG G PPP
Sbjct: 184 GHNGGGFGGF---GGGSGGPPP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,391
Number of Sequences: 5004
Number of extensions: 35507
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)