Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C19
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    32   0.12 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    28   2.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   4.7  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 508 ICSTLKLFLLH--KSYAIPTKLVDPVFGTLLYIMTVWSALFRENWRESVNP 362
           IC  L+ F+LH  K +++P  L  P    L  ++++ S+   ++WRES  P
Sbjct: 438 ICFALR-FILHNYKDFSLPRSLPRPFLLALSILLSIISSFLVKHWRESKVP 487


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 596  WFDIMPSGYILSKFILVIQRHDMSVGG 516
            WFD  P+G I+++F   I+  DM++ G
Sbjct: 984  WFDKTPTGRIVNRFAKDIRSIDMNLSG 1010


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/111 (18%), Positives = 42/111 (37%)
 Frame = +3

Query: 183 FSFNFEALRTFRIDMLNFNKLCLYSCLCVIVIIVLYFQSEIGRMEENYRKLEIRLAHPGI 362
           +  +FE       D+ N N +   S + ++  I +    E      N  +    + H  I
Sbjct: 161 YILDFEQADKLLSDLKNSNHVFATSIILIVTAIAVALSLE--SFPSNIERYFSAVNHSAI 218

Query: 363 GLTDSRQFSLNNADQTVIIYNRVPKTGSTSFVGIAYDLCKRNNFKVLHINI 515
            L+D+    +++     +I+             I   LC RN F+ ++ ++
Sbjct: 219 ELSDALNSKIDDFLNEEVIFRLWRNIDRIRLHAIRAQLCMRNQFRSMNTDL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,561
Number of Sequences: 5004
Number of extensions: 73599
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)