Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C19
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1005 + 21646323-21646403,21646724-21646906,21648014-216481...    30   2.1  
02_04_0610 + 24335153-24337724,24337835-24338256                       30   2.1  
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349...    30   2.8  
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    28   8.6  
02_05_1021 + 33565866-33567431,33568317-33568604                       28   8.6  

>04_03_1005 +
           21646323-21646403,21646724-21646906,21648014-21648133,
           21648458-21648649,21648848-21649153,21650004-21650714
          Length = 530

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 532 ICLLAVMLICSTLKLFLLHKSYAIPTKLVD--PV-FGTLLYIMTVWSALFRENW 380
           +CL+A + IC T  +FLL  +Y I     +  PV  G  L ++ +W  L    W
Sbjct: 450 VCLVAFLWICYTCTVFLLPTAYPISAGNFNYAPVALGACLGLIGLWWVLDARRW 503


>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 729 HRSVGNNNM-KLVCPMVSLLSL*IGVLMMYLISQNLRRPY 613
           HR    +N+ +L+ P+V  LSL + + ++YL+ +  RR Y
Sbjct: 606 HRKERKSNLTRLLIPIVGFLSLTVLICLIYLVKKTPRRTY 645


>11_06_0032 +
           19432305-19432510,19433390-19434326,19434880-19434975,
           19435518-19435654,19435888-19436056
          Length = 514

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 439 VFGTLLY--IMTVWSALFRENWRESVNPIPGWANLI 338
           VF +L Y  +M VWS+ +   WR+ + PI  W  LI
Sbjct: 218 VFMSLAYLLVMVVWSSQYIRFWRD-IMPIQNWITLI 252


>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 523 LAVMLICSTLKLFL---LHKSYAIPTKLVDPVF 434
           LA M  C T   F+   L K YA+P ++VD VF
Sbjct: 328 LAEMEYCGTTSYFIKLFLDKKYALPYRVVDAVF 360


>02_05_1021 + 33565866-33567431,33568317-33568604
          Length = 617

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 403 TRLSLYTIGSRRRGPRVSWESRTICARGTILKCYIST 513
           +R  + TIGS    P + W      +RGT  +C+ ST
Sbjct: 375 SRGRVQTIGSSSESPVLQWSQGHQFSRGTNFQCFAST 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,845,913
Number of Sequences: 37544
Number of extensions: 428230
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)