Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C19
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-10|CAB03945.2|  324|Caenorhabditis elegans Hypothetical p...   198   4e-51
AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfa...   198   4e-51
AF099003-2|AAC68743.2|  454|Caenorhabditis elegans Hypothetical ...    30   1.9  

>Z81479-10|CAB03945.2|  324|Caenorhabditis elegans Hypothetical
           protein C34F6.4 protein.
          Length = 324

 Score =  198 bits (483), Expect = 4e-51
 Identities = 85/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
 Frame = +3

Query: 411 VIIYNRVPKTGSTSFVG-IAYDLCKRNNFKVLHINITANRHIMSLNNQYKFAQNVTTWHD 587
           ++IYNR+PKTGST+F   IAYDL K N F VLH+N+T NR +MSL +QY F  N+TTW +
Sbjct: 41  IVIYNRIPKTGSTTFTNAIAYDLYKENGFSVLHVNMTKNRQVMSLPDQYTFVNNITTWTE 100

Query: 588 VKPALYHGHMAFLNFERLGTSSKPLFINLIRKPLDRLVSYYYFLRYGDNXRPHLVRKKHG 767
             PA YHGH+AF++F+R G ++ P++IN+IR+PL+RL+S+YYFLRYGDN R  L R + G
Sbjct: 101 RLPAFYHGHVAFIDFQRFGIAN-PIYINIIREPLERLLSHYYFLRYGDNYRIGLKRSRAG 159

Query: 768 DKMTFDECVEXSXPDCXPNNMWXQVPFFCGXXAKC 872
           +  TFDEC      DC    MW Q+P+FCG    C
Sbjct: 160 NNETFDECYSRGGKDCDMKQMWIQIPYFCGHYHFC 194


>AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfate
           2O-sulfotransferase protein.
          Length = 324

 Score =  198 bits (483), Expect = 4e-51
 Identities = 85/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
 Frame = +3

Query: 411 VIIYNRVPKTGSTSFVG-IAYDLCKRNNFKVLHINITANRHIMSLNNQYKFAQNVTTWHD 587
           ++IYNR+PKTGST+F   IAYDL K N F VLH+N+T NR +MSL +QY F  N+TTW +
Sbjct: 41  IVIYNRIPKTGSTTFTNAIAYDLYKENGFSVLHVNMTKNRQVMSLPDQYTFVNNITTWTE 100

Query: 588 VKPALYHGHMAFLNFERLGTSSKPLFINLIRKPLDRLVSYYYFLRYGDNXRPHLVRKKHG 767
             PA YHGH+AF++F+R G ++ P++IN+IR+PL+RL+S+YYFLRYGDN R  L R + G
Sbjct: 101 RLPAFYHGHVAFIDFQRFGIAN-PIYINIIREPLERLLSHYYFLRYGDNYRIGLKRSRAG 159

Query: 768 DKMTFDECVEXSXPDCXPNNMWXQVPFFCGXXAKC 872
           +  TFDEC      DC    MW Q+P+FCG    C
Sbjct: 160 NNETFDECYSRGGKDCDMKQMWIQIPYFCGHYHFC 194


>AF099003-2|AAC68743.2|  454|Caenorhabditis elegans Hypothetical
           protein Y59C2A.1 protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 513 ITANRHIMSLNNQYKFAQNVTTWHDVKPALYHGHMAFLNFERLGTSSKPLFINLIR 680
           I A RH M  N+  +  + + TW +     YH +   + F +L +  K   + +++
Sbjct: 117 INAERHAMIRNSVRRRKRAMKTWQEFDTNAYHSYNEMVEFMKLLSEQKSDMVEMVK 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,749,807
Number of Sequences: 27780
Number of extensions: 415915
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)