Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C19
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 523 LAVMLICSTLKLFLLHKSYAIPTKLVDPVFG 431
           L++ ++ S    FLL      PT LV P+ G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 523 LAVMLICSTLKLFLLHKSYAIPTKLVDPVFGT-LLYIMTV 407
           L++ ++ S    FLL      PT L  P+ G  LL+ M +
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVL 309


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 523 LAVMLICSTLKLFLLHKSYAIPTKLVDPVFGTLL 422
           L++ ++ S    FLL      PT LV P+ G  L
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 523 LAVMLICSTLKLFLLHKSYAIPTKLVDPVFGTLL 422
           L++ ++ S    FLL      PT LV P+ G  L
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 454 KLVDPVFGTLLYIMTVWSALFRENWRESVNPIP 356
           K VDP+FGT+  +  + +   ++N +  ++ +P
Sbjct: 88  KDVDPIFGTIKDLEDLTAEAKKQNLKVILDLVP 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,700
Number of Sequences: 438
Number of extensions: 5169
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)