Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C18
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   8.2  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    26   8.2  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   8.2  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 298 DEF*NFSLRHI*WRNSLEMYK 360
           DEF NF+++H  +  +LE+YK
Sbjct: 903 DEFKNFTIQHKLYPRALELYK 923


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 183 ALKQYYQTKIL*LQKQKMLRNLTFLQQKHGCSQRKHYFRRILKFQFEAYLMEKQSG 350
           ++ ++Y+   L  Q Q  L ++  L +       ++YF   L+FQ  AY ++ + G
Sbjct: 121 SISEHYRDAKLMHQVQPQLSSILELPELMNACIERNYFSETLEFQALAYRLKDRFG 176


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 507 QLTILKTSVENSDDTTEHCKLLVLLLK 587
           +L + K S    D T + CKL+ LLL+
Sbjct: 313 ELEVEKLSSVTEDSTAQTCKLITLLLR 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,367
Number of Sequences: 5004
Number of extensions: 65679
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)