Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_C17
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.011
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.081
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.14
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 30 0.33
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -3
Query: 781 PPPPPPPPXXXXXXXXXXXXXXXKXXXXPPPPPPPPXXXKKKKK 650
PPPPPPPP + PPPPPPP K+K K
Sbjct: 9 PPPPPPPPGF-------------EPPSQPPPPPPPGYVKKRKNK 39
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.081
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 781 PPPPPPPPXXXXXXXXXXXXXXXKXXXXPPPPPPPP 674
PPPPPPPP PPPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGP-------------PPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 782 PPPPPPPXPXXXXXXXXXXXXXXKKXXXPPPPPPPP 675
PPPPPP PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 781 PPPPPPPPXXXXXXXXXXXXXXXKXXXXPPPPPPPP 674
PPPPP PPPPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 780 PPPPPPXPXXXXXXXXXXXXXXXKXXXPPPPPPPP 676
PPPPPP P PPPPPPPP
Sbjct: 761 PPPPPPPPGVAGAG-------------PPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -2
Query: 782 PPPPPPPXPXXXXXXXXXXXXXXKKXXXPPPPPPP 678
PPPPPP P PPPPPPP
Sbjct: 311 PPPPPP--PSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 29.1 bits (62), Expect = 0.75
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -1
Query: 774 PPPPXPXXXXXXXXXXXXXXXKXXXPPPPPPPP 676
PPPP P PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 776 PPPPPXPXXXXXXXXXXXXXXKKXXXPPPPPP 681
PPPPP P + PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRS--APPPPPP 366
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 712 KXXXXPPPPPPPPXXXKKK 656
K PPPPPPPP +KK
Sbjct: 1090 KPSAVPPPPPPPPAEVEKK 1108
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 696 PPPPPPPXXXXKKK 655
PPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 698 PPPPPPPP 675
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 698 PPPPPPPP 675
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 698 PPPPPPPP 675
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 698 PPPPPPPP 675
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 698 PPPPPPPP 675
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 698 PPPPPPPP 675
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 781 PPPPPPPP 758
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 699 PPPPPPPP 676
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 11/46 (23%)
Frame = -1
Query: 780 PPPPPP-----------XPXXXXXXXXXXXXXXXKXXXPPPPPPPP 676
PPPPPP P PPPPPPPP
Sbjct: 907 PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,221
Number of Sequences: 5004
Number of extensions: 34054
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -