Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C16
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    31   0.17 
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   4.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   4.8  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 584 WRHLPGAITDNTPSEDSRDSTDSAVQPSGK 495
           W H+PG IT+N  ++D+++   S V    K
Sbjct: 128 WSHIPGMITENQTNDDAKEVNGSDVDEKSK 157


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 614 DRNLAFTLHCWRHLPGAITDNTPSEDSRDSTDSAV 510
           D    F L C R L  +   N PS+ +R S   AV
Sbjct: 69  DEGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAV 103


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 543 RWCVVCNRTRKVPPAVE 593
           R+C++CN   K+ PA++
Sbjct: 152 RFCIICNYINKISPAIQ 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,158
Number of Sequences: 5004
Number of extensions: 49552
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)