Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C16
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   8.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   8.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 152 NQRHFVVVDL*RCSLSFEDFSHLFQVT 72
           N+   V++D  RCS+ +    H F+++
Sbjct: 199 NKNGSVILDTARCSMKWTLIEHAFEIS 225


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 508 SPPAKRSDE*IDAICN 461
           +PP   ++E +DA+CN
Sbjct: 453 APPQLPTEESVDALCN 468


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 271 NTTARGVTLLPRLETLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGY 417
           N T   VT     ETL S +   KD++     ++     +ISV   +G+
Sbjct: 24  NETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCEGF 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 598  SPSTAGGTFLVRLQTTHHLKTAGTPQIQPYSP 503
            S     G F +R  TT+HL+     +I    P
Sbjct: 932  SQQNVAGVFNLRPATTYHLRIVAENEIGASDP 963


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 271 NTTARGVTLLPRLETLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGY 417
           N T   VT     ETL S +   KD++     ++     +ISV   +G+
Sbjct: 24  NETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCEGF 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,780
Number of Sequences: 438
Number of extensions: 3527
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)