Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_C15
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.31
03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826 31 1.3
03_05_0447 - 24421442-24422767 29 3.8
11_06_0142 - 20564572-20565951 29 5.1
07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103 29 6.7
05_07_0219 - 28474661-28475146,28475979-28476644 28 8.9
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 8.9
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 28 8.9
04_04_0437 + 25193263-25194627 28 8.9
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 8.9
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 28 8.9
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.31
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 244 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 384
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826
Length = 196
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 179 AEEVPYQGKYSTA*RTRRPHSDPPSLTVSNRVSRTWTPAS-VSTRRTPSRTPCSPSCL 349
AE QGK RT S PP TVS + WT S+ T S P SPS L
Sbjct: 38 AEAWHAQGKSVILVRTGIGLSVPPGFTVSTEACQQWTHVDHTSSSLTSSLYPLSPSSL 95
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 68 LDGCSSARKAATMVDAATLEKLEAGFSKLQG 160
+DGC S+ ++ AA L +LEAG K G
Sbjct: 62 IDGCGSSGAGDALLAAAALARLEAGLRKRTG 92
>11_06_0142 - 20564572-20565951
Length = 459
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 248 PSLTVSNRVSRTWTPASVSTRRTPSRTPCSPSCL 349
P L S V R+W A + RR R+P P CL
Sbjct: 31 PDLVHSGAVCRSWHSAFATFRRLGLRSPPHPPCL 64
>07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103
Length = 267
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 233 PHSDPPSLTVSNRVSRTWTPASVST-RRTPSRTPCS 337
P DP S VS R+ R PA+ RR S TPCS
Sbjct: 145 PTDDPISCLVSLRLRRRRRPAAADRWRRRSSITPCS 180
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 233 PHSDPPSLTVSNRVSRTWTPASVSTRRTPSRTPCSPSCL 349
PH PPS S+ + T T + T TP+ P S + L
Sbjct: 86 PHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLL 124
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 233 PHSDPPSLTVSNRVSRTWTPASVSTRRTPSRTPC 334
P PP + R SRT TPA+ S+ P+ PC
Sbjct: 340 PAPPPPPPPAAKRTSRTSTPATTSS-SAPASGPC 372
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 28.3 bits (60), Expect = 8.9
Identities = 27/101 (26%), Positives = 43/101 (42%)
Frame = -1
Query: 551 SSISLYWDSVXQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVFLKPL 372
+++++Y+ + G K SS R R ++ G RL ST P LG S F P
Sbjct: 509 NAVNMYYSPLGPGFKQIESSP-DVRLRPRFSHD-RGIRLSPGSTGPMSLGASPSQFTPPN 566
Query: 371 W*SSMIGSNSSANTEYDSASGA*IPTPESKFSTPDWIQSRR 249
+ + +++ + ASG +P K TP RR
Sbjct: 567 YQMQIPSNSTGMHGSGSPASGGIHGSPLGK--TPSSYSKRR 605
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 223 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 348
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 491 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 384
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -1
Query: 563 PETLSSISLYWDSVXQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 384
P + +Y + G+ GY S PQ ++ R+P+ T F GC S+F
Sbjct: 198 PTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---FTNGCFSIF 254
Query: 383 LK 378
++
Sbjct: 255 VQ 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,055,227
Number of Sequences: 37544
Number of extensions: 438239
Number of successful extensions: 1451
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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