Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C13
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0309 - 7307241-7307715,7309383-7309591,7309730-7309830,730...    31   1.6  
10_01_0087 - 1072279-1072762,1074884-1075020,1075379-1075479,107...    30   2.2  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    29   5.0  

>03_02_0309 -
           7307241-7307715,7309383-7309591,7309730-7309830,
           7309918-7310149
          Length = 338

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 828 RFKVLFKYKTFFTDFTNIRFHGC 760
           R+KV +KY  +  +FT++  HGC
Sbjct: 225 RYKVNYKYAPYVAEFTDLLLHGC 247


>10_01_0087 -
           1072279-1072762,1074884-1075020,1075379-1075479,
           1075581-1075806
          Length = 315

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 828 RFKVLFKYKTFFTDFTNIRFHGC 760
           R+KV +KY  F  +F+ +  HGC
Sbjct: 199 RYKVNYKYAPFVAEFSELMLHGC 221


>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
            27014914-27014943,27018095-27019987
          Length = 1485

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 352  GELLA-WLVCGLSLMKQENNTKRRSEETFTSI 444
            G LL  W+  G S  K+ NN ++ +EE FT++
Sbjct: 968  GRLLRRWIAEGYSRAKRNNNAEKEAEEQFTAL 999


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,938,582
Number of Sequences: 37544
Number of extensions: 305168
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)