Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C13
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U39998-8|AAA81104.1|  419|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 826 THMXMHPSEKRYGCEVCEKK 885
           TH+ +H  +K Y C+VC+ K
Sbjct: 581 THLRLHNGQKPYTCDVCDAK 600


>U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical
           protein C33G8.5 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 553 RQKNVQLLTVNKIRAKLQK-IHTLEEIHVFVCSVCFRFLFFKKLNLGHSHV*HFNRVKVF 729
           R++N Q L     R  L++ I +++ +++F+ + CF F FF  +        HFN  K+ 
Sbjct: 213 RKRNTQKLQTLSTRYTLEQGIRSIKALNMFINANCFVFFFFSFIGTSL----HFNSSKMS 268

Query: 730 LNVY 741
              Y
Sbjct: 269 RPTY 272


>U39998-8|AAA81104.1|  419|Caenorhabditis elegans Hypothetical
           protein ZK622.1 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 344 QSSIKTTCRVQWNGKCH 294
           Q S KT   V+W GKCH
Sbjct: 62  QDSAKTVLSVKWKGKCH 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,822
Number of Sequences: 27780
Number of extensions: 325099
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)