Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C12
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.061
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.75 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 22/64 (34%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = -1

Query: 663 GGGGGGXGKKXXXPPPXXXXXGXXXXXXXXXXXXXXXXXGGGXPAPXXGG-GGXPPXPPG 487
           GGG GG G     PPP     G                  GG P    GG GG    P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 486 XGGG 475
            GGG
Sbjct: 247 FGGG 250


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +2

Query: 476 PPPXP--GGXGGXPPPP-XXGAGXPPP 547
           PPP P  GG    PPPP   GAG PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 534 PAPXXGGGGXPPXPPGXGG 478
           PAP  GG   PP PPG  G
Sbjct: 754 PAPIMGGPPPPPPPPGVAG 772



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +2

Query: 476 PPPXPG--GXGGXPPPP 520
           PPP PG  G G  PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 479  PPXPGGXGGXPPPPXXGAGXPP 544
            PP P    G PP P   AG PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPP 1190


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 476 PPPXPGGXGGXPPPPXXGAGXPPP 547
           PPP     G  P PP   +  PPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 479  PPXPGGXGGXPPPPXXGAGXP 541
            PP P G    PPPP   +  P
Sbjct: 1721 PPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,693
Number of Sequences: 5004
Number of extensions: 9938
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)