Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C11
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.026
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.033
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 856 PPPPXXXXXFXXXXPPPPPPPP 791
           PPPP          PPPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 855 PPPPXXXXFXXXXXPPPPPPPP 790
           PPPP          PPPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 885 PXSFFFXPXXPPPPXXXXFXXXXXPPPPPP 796
           P      P  PPPP          PPPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect(2) = 0.026
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -1

Query: 896 PXXPXVLFFFXXXXPPPXXXXXFXXXXPPPPPPPP 792
           P  P V+       P P          PPPPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 896 PXXPXVLFFFXXXXPPPXXXXXFXXXXPPPPPPP 795
           P  P          PPP          PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 24.6 bits (51), Expect(2) = 0.026
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 815 PPPPPPPPXXG 783
           PPPPPPP   G
Sbjct: 762 PPPPPPPGVAG 772


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 855 PPPPXXXXFXXXXXPPPPPPP 793
           PPPP    F     PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 33.5 bits (73), Expect = 0.043
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 856 PPPPXXXXXFXXXXPPPPPPPP 791
           PPPP     F     PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect(2) = 0.20
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 734 PPPGXXXXXXXXXXXPPPPPXXXFXFKKKKK 642
           PPP            PPPPP   +  K+K K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 23.0 bits (47), Expect(2) = 0.20
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 2/13 (15%)
 Frame = -1

Query: 815 PP--PPPPPPXXG 783
           PP  PPPPPP  G
Sbjct: 5   PPGNPPPPPPPPG 17


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 814 PPPPPPPPXXXXFF 773
           PPPPPPPP    F+
Sbjct: 306 PPPPPPPPPSNDFW 319


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 870 FXPXXPPPPXXXXFXXXXXPPPPPPPP 790
           F P     P          PPPPPPPP
Sbjct: 171 FQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 813  PPPPPPPP 790
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 813 PPPPPPPP 790
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 814 PPPPPPPP 791
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,789
Number of Sequences: 5004
Number of extensions: 37204
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)