Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C09
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   199   4e-52
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    62   1e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   1e-06
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    34   0.034
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.0  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   4.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.9  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   9.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   9.1  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    26   9.1  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  199 bits (486), Expect = 4e-52
 Identities = 102/139 (73%), Positives = 114/139 (82%), Gaps = 3/139 (2%)
 Frame = +3

Query: 240 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 410
           D QFED  +LP ILNALEV+   + RLVLEVAQH+GENTVRTIAMDGTEGLVRG  V+D+
Sbjct: 66  DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125

Query: 411 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 590
           GSPI IPVG  TLGRI+NVIGEP+DERGPI   K + IHA+AP F + S   EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185

Query: 591 VVDLLAPYAKGGKIGLFGG 647
           VVDLLAPYA+GGKIGLFGG
Sbjct: 186 VVDLLAPYARGGKIGLFGG 204


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = +3

Query: 321 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 497
           +A +L  +TV  +   G + LVR G+ V  +   + +PVG   LGR+++ +G PID +GP
Sbjct: 90  MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148

Query: 498 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFG 644
           I T +   +  +AP  +  +   E + TG+K +D + P  +G +  + G
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIG 197


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
 Frame = +3

Query: 312 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 488
           VLEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+ N  G PID+
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118

Query: 489 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLF 641
              +  +    I+            +E++ TGI  +D L   A+G KI +F
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPIF 169


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 27/108 (25%), Positives = 46/108 (42%)
 Frame = -3

Query: 634 PIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMM 455
           PI P        +++ +P T  SC T  S  +G S+ ++  ++  + P S+  + I +  
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 265

Query: 454 RPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 311
               S  T      P +ST C  T  S+P      T  +P    TS++
Sbjct: 266 TSTSSTDTN-SSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 496 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 362
           G R++ G+P  +    R+++ PT I    PES       K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
 Frame = +3

Query: 303 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 482
           P +  E  +H G N+         EG+V+    L++  P+ IPV  +      N IGE  
Sbjct: 10  PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61

Query: 483 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGL 638
            +R P    K  A  H    + V+ ++  E  + G KV + L P+A    I L
Sbjct: 62  -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFADRSAIFL 110


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 121 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 231
           NPF N ++S+++MP      L+NLQE + +   P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 372 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 488
           T GL  G PV  +G P+ + +G      I + I  P+ +
Sbjct: 77  TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 502 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 359
           G G ++S+GS     +  R+  PT   MG   S+ G   T P+    A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 638 QPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 504
           +P+ SSF   +E +     S  +LL+ + + KL SFS+ + S+ G
Sbjct: 322 KPDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKG 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,618
Number of Sequences: 5004
Number of extensions: 57696
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)