Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_C09
(966 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 239 3e-63
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 67 2e-11
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 67 2e-11
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 53 4e-07
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 49 6e-06
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 47 2e-05
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.70
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 1.6
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.7
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 3.7
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 6.5
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 6.5
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 239 bits (584), Expect = 3e-63
Identities = 113/136 (83%), Positives = 124/136 (91%)
Frame = +3
Query: 240 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 419
DVQF++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P
Sbjct: 81 DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140
Query: 420 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 599
I+IPVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV+MSV+QEILVTGIKVVD
Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVD 200
Query: 600 LLAPYAKGGKIGLFGG 647
LLAPYAKGGKIGLFGG
Sbjct: 201 LLAPYAKGGKIGLFGG 216
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 67.3 bits (157), Expect = 2e-11
Identities = 32/108 (29%), Positives = 58/108 (53%)
Frame = +3
Query: 321 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 500
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 501 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFG 644
+ + + +AP + +E +VTG+K VD L P +G + + G
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 170
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 67.3 bits (157), Expect = 2e-11
Identities = 32/108 (29%), Positives = 58/108 (53%)
Frame = +3
Query: 321 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 500
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 501 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFG 644
+ + + +AP + +E +VTG+K VD L P +G + + G
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 197
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 52.8 bits (121), Expect = 4e-07
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +3
Query: 333 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTD 509
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+ +
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130
Query: 510 KTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLF 641
I+ + +E++ TGI +D++ A+G KI +F
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIF 174
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 48.8 bits (111), Expect = 6e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 408 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 587
+G R PV + LGRI N G+PID+ P+ + I+ + + +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 588 KVVDLLAPYAKGGKIGLF 641
+D++ A+G KI +F
Sbjct: 169 SAIDVMNSIARGQKIPIF 186
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 47.2 bits (107), Expect = 2e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 465 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFG 644
V+G PID +GPI + + + +AP + +E +VTG+K VD L P +G + + G
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 162
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 372 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 488
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -3
Query: 592 TFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRS-SIGSPITL-MMRPRV---SAPTG 428
TF PVT +S + +T + + + P + + +P T+ M P + P
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVP 527
Query: 427 IRMGEPESSTGCPRTKPSVPS 365
G P + T P TKP+VPS
Sbjct: 528 TTTGSPTTQTTAPVTKPTVPS 548
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 3.7
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Frame = -3
Query: 652 NTPPNNPIFP-PLA*GASRSTTFIP-----VTR--ISCCTDMSTNSGASA*IAAVLSVGM 497
NTPP NP P G S+ T I +T ++ M+ + AS +
Sbjct: 498 NTPPANPTTATPTTVGTSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPTTTPTHTTAS 557
Query: 496 GPRSSIGSPITLMMRPRV---SAPTGIRMGEPESSTGCPRTKPSVPS 365
P ++ T + P + P G P + T P TKP+VPS
Sbjct: 558 QPTTTKPVVTTNSVTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPS 604
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 366 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 542
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 543 FVDMSV 560
+++V
Sbjct: 210 HAELTV 215
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 553 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 374
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 373 VPSMAMVRTVFSP 335
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 553 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 374
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 373 VPSMAMVRTVFSP 335
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,996
Number of Sequences: 27780
Number of extensions: 336837
Number of successful extensions: 944
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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