Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C08
         (928 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0I6R0 Cluster: Putative uncharacterized protein; n=1; ...    40   0.12 
UniRef50_Q72MW5 Cluster: Acriflavin resistance; n=2; Leptospira ...    35   2.6  
UniRef50_Q0P966 Cluster: Bipartate energy taxis response protein...    35   3.4  
UniRef50_Q1MXI9 Cluster: TriK protein; n=1; Oceanobacter sp. RED...    33   7.8  

>UniRef50_Q0I6R0 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. CC9311|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain CC9311)
          Length = 391

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 404 PIDEPLYDLGPHTSSI--PVQETYSQNFEFGGYIDQVERTYEALRGVDPRLDRRMPFSMF 577
           PI   LY   P   ++  P   T S       Y++Q+  ++  L+ +DP+L       +F
Sbjct: 16  PIKSGLYTSLPCQENVSGPCDGTQSYAHHLKAYLNQLSDSF--LKNIDPQLSELYKLHLF 73

Query: 578 QHSMCTVLNAY-IIDLTLDNGERKMDS 655
            H+ CT    + ++D    NG R+ DS
Sbjct: 74  DHTRCTHFARFVVVDQLFYNGRRRNDS 100


>UniRef50_Q72MW5 Cluster: Acriflavin resistance; n=2; Leptospira
            interrogans|Rep: Acriflavin resistance - Leptospira
            interrogans serogroup Icterohaemorrhagiae
            serovarcopenhageni
          Length = 1083

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = -1

Query: 526  SLIGALHLINIATKLKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRS 368
            S+IG + LI +ATK  +L V F N+   S G ++ E  I  GR  LR  ++ S
Sbjct: 966  SMIGLIMLIGVATKNSILLVDFTNQ-LLSQGKEMKEAIIEAGRERLRPILMTS 1017


>UniRef50_Q0P966 Cluster: Bipartate energy taxis response protein
           cetA precursor; n=12; Campylobacter|Rep: Bipartate
           energy taxis response protein cetA precursor -
           Campylobacter jejuni
          Length = 459

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +2

Query: 599 LNAYIIDLTLDNGERKMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEI 760
           L+  ++DL+L  G +  D ++    L +D+ + +N+Y  + +I +T T NG E+
Sbjct: 154 LSRTLMDLSL--GNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEV 205


>UniRef50_Q1MXI9 Cluster: TriK protein; n=1; Oceanobacter sp.
           RED65|Rep: TriK protein - Oceanobacter sp. RED65
          Length = 671

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 467 YSQNFEFGGYIDQVERTYEALRGVDPRLDRRMPFSMFQHSMCTVLNAYIIDLTLDNGE 640
           Y +    GG IDQ  R  + +  +DP+ D+ +P+ M+  + C  +    + ++L +GE
Sbjct: 209 YGKGVILGGLIDQAIRRNDTVFYIDPKEDKFLPYIMY--NACKEMGRKFVYVSLKDGE 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,525,009
Number of Sequences: 1657284
Number of extensions: 14988630
Number of successful extensions: 41318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41286
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85260991088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)