Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C08
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    32   0.67 
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    32   0.67 
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    29   4.7  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    29   4.7  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26b protein.
          Length = 1133

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 108 IIPRPKALEEVNHNRVAIPLVV*RKAAGTIAVPTSSSRDKLSVTTGTKFVTLNKENRNLA 287
           II     ++ +   RVA+P++   +      +  S  +D   +  G KF      N  LA
Sbjct: 116 IIKNKDHIDMIVKRRVAVPMLEYEQRTLKFTLSKSRKKDDFGIVVGCKFYIKEIRNPKLA 175

Query: 288 DQPRGQRTGES 320
           ++  G + G+S
Sbjct: 176 EKDPGLKEGDS 186


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26a protein.
          Length = 1172

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 108 IIPRPKALEEVNHNRVAIPLVV*RKAAGTIAVPTSSSRDKLSVTTGTKFVTLNKENRNLA 287
           II     ++ +   RVA+P++   +      +  S  +D   +  G KF      N  LA
Sbjct: 116 IIKNKDHIDMIVKRRVAVPMLEYEQRTLKFTLSKSRKKDDFGIVVGCKFYIKEIRNPKLA 175

Query: 288 DQPRGQRTGES 320
           ++  G + G+S
Sbjct: 176 EKDPGLKEGDS 186


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 484 LKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRSSG 362
           LK LRV  ++RD   + +Q++E+++  G  L + K +  SG
Sbjct: 223 LKDLRVLDISRDWDILNTQIIEQYLECGMVLPKLKFLDCSG 263


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 484 LKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRSSG 362
           LK LRV  ++RD   + +Q++E+++  G  L + K +  SG
Sbjct: 223 LKDLRVLDISRDWDILNTQIIEQYLECGMVLPKLKFLDCSG 263


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 484 LKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRSSG 362
           LK LRV  ++RD   + +Q++E+++  G  L + K +  SG
Sbjct: 223 LKDLRVLDISRDWDILNTQIIEQYLECGMVLPKLKFLDCSG 263


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 549 WIGVCPSVCSNIRCVLFLMHTSSI*L*IMVRERWIQRDARTFY 677
           W+ V  SV ++    L+L  TSS+ L + +RE+ ++     FY
Sbjct: 101 WLFVASSVETSFHYTLYLQFTSSVLLYVFLREKDLKSSWTLFY 143


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 572 MFQHSMCTVLNAYIIDLTLDNGERKMDSARCQDLLPEDLCLPENLYHYITSI-GNTTTVN 748
           +   S C+ L A +I+  L   E K  + RCQ     ++C+   +Y+ + S+  +T  +N
Sbjct: 250 ILSESTCSQLLAKVIEDNLAKNELKQLARRCQ---TAEVCMSPCIYYAMISVLRSTFDLN 306

Query: 749 GEEIFYXD 772
             E+ + +
Sbjct: 307 DSELIFIE 314


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 488 GGYIDQVERTYEALRGVDPRLDRRMPFSMFQHSMCTVLNAYIIDLTLDN-GERKMDSARC 664
           G Y D +    + +RGV   LD    F  F      VL        +D   ER+   A  
Sbjct: 140 GRYFDALFTMQKMIRGVI--LDHSEHFDYFDTFFKDVLLGNCRYQNIDQVAERQSQLAFL 197

Query: 665 QDLLPEDLCLPEN 703
           +++LP D  LP+N
Sbjct: 198 EEILPSDFILPQN 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,538
Number of Sequences: 27780
Number of extensions: 350588
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)