Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C07
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    31   0.22 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    30   0.50 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    29   0.66 
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    29   0.88 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   4.7  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    27   4.7  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   8.2  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +3

Query: 276 GFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEAS 455
           GF  G  E  +   ++   PK  K       LN +    +  ++     SE+ S D + S
Sbjct: 191 GFSTGTNESEITPNIKVLPPKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNS 250

Query: 456 GEQDVLTSEHQVRKAVSSEPEE 521
            E++  T+E   + A  + PE+
Sbjct: 251 SEENKDTNEPSTKDAEKTVPED 272


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 348 EPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLE-ASGEQDVLTSEHQVRKAVSSEPEEY 524
           EP+K +          VA+E+E   +++T A  E A   +D  +S +   ++  S+ +  
Sbjct: 79  EPNKESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSA 138

Query: 525 KPPVIP 542
            PP +P
Sbjct: 139 LPPNVP 144


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 650 FYIWWKFYSYIKIHKSLRPRVIFSVRSIVALASLL 546
           F++  K Y ++   K+LR   IFS  + VA+A +L
Sbjct: 171 FFVGCKIYDWVAGSKNLRASTIFSKETTVAIAPML 205


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 576 DRENYSWAQTLMDLDVTVKLPPDIKSSKDLKVAINPGDIYV 698
           +   Y W QT+ D+D+ + +P   + +K L+V ++  D+ +
Sbjct: 7   EEAEYEWDQTIADVDIVIHVPKGTR-AKSLQVDMSNHDLKI 46


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +3

Query: 420 ASEDTSADLEASGEQDVLTSE-----HQVRKAVSSEPEEYKPPVIP 542
           ++    AD+  S  QD++ +E        R++VSS P  + PP +P
Sbjct: 234 SASSKGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVP 279


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 687 DIYVCRQNGDVIVKDSLLFKIRPVIVLESXRXTIVDASG 803
           D+  C     ++V ++  + I+P  VLE  + T++D SG
Sbjct: 350 DLQSCEYIEQIVVTNT--YPIKPQAVLECDKLTVIDISG 386


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 507 SKLLSLLDVQMLGHLVPHLPRGPQRYLH*QLLRPLEQQSST*SRCLNQC 361
           S+ L  L++Q +      LP G Q Y   QLLR   +QS      LN+C
Sbjct: 184 SEDLEDLNLQSIVQTFEDLPEGIQSYAFFQLLRSCNRQSM--RLLLNEC 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,105
Number of Sequences: 5004
Number of extensions: 74358
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)