Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C07
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    42   6e-04
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      42   6e-04
AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical ...    29   3.3  
U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical p...    29   4.4  
U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
 Frame = +3

Query: 132 NEFSQYDDILSNILVN-EKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELV 308
           +++ ++D +L ++       +   L  +F FL+R+TDFY    G  +         ++  
Sbjct: 2   SQYERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSGA-GVDQARTLLLEKFDKHG 60

Query: 309 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIAS---EDTSADLEASGEQDVLTS 479
            K ++  +    ++  +   L          +E E   +   E T  +  A  ++    S
Sbjct: 61  GKAMKEAEEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNS 120

Query: 480 EHQVRKAVSSEPEEYKPPVIPIQK----RSECYNGADRENYSWAQTLMDLDVTVKLPPDI 647
              + K V +E E  K   +  +     +    NGAD   Y W QTL +L+V + +    
Sbjct: 121 VENLEKFVDNEGETSKDAEVEDEDSKLMKPNSGNGADLAKYQWTQTLQELEVKIPIAAGF 180

Query: 648 K-SSKDLKVAINPGDIYVCRQNGDVIVKDSLLFKIR 752
              S+D+ V I    + V  +N   IV   L   I+
Sbjct: 181 AIKSRDVVVKIEKTSVSVGLKNQAPIVDGKLPHAIK 216


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
 Frame = +3

Query: 132 NEFSQYDDILSNILVN-EKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELV 308
           +++ ++D +L ++       +   L  +F FL+R+TDFY    G  +         ++  
Sbjct: 2   SQYERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSGA-GVDQARTLLLEKFDKHG 60

Query: 309 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIAS---EDTSADLEASGEQDVLTS 479
            K ++  +    ++  +   L          +E E   +   E T  +  A  ++    S
Sbjct: 61  GKAMKEAEEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNS 120

Query: 480 EHQVRKAVSSEPEEYKPPVIPIQK----RSECYNGADRENYSWAQTLMDLDVTVKLPPDI 647
              + K V +E E  K   +  +     +    NGAD   Y W QTL +L+V + +    
Sbjct: 121 VENLEKFVDNEGETSKDAEVEDEDSKLMKPNSGNGADLAKYQWTQTLQELEVKIPIAAGF 180

Query: 648 K-SSKDLKVAINPGDIYVCRQNGDVIVKDSLLFKIR 752
              S+D+ V I    + V  +N   IV   L   I+
Sbjct: 181 AIKSRDVVVKIEKTSVSVGLKNQAPIVDGKLPHAIK 216


>AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical
           protein ZC581.3 protein.
          Length = 691

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
 Frame = +3

Query: 234 TDFYYVPDGQY---ENIGFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQ 404
           TD +Y  D +Y   +N   P      +  ++  +    + KE  K ++ N  +  +T  Q
Sbjct: 402 TDHHYDEDHEYHDSDNTTHPTISVVSIETRLSESDSDADSKE--KQSEDNALVEVTTPDQ 459

Query: 405 EVEV----IASEDTSADLEASGEQDVLTSEHQVRKAVSSEPEEYKPPVIPIQKRSECYNG 572
            + +    I + + S DLE SGE+  + +    RK  S +  E  PP       S  Y+ 
Sbjct: 460 LLNLTPPNIVNSNESEDLEESGEEIQIETTTLKRKVFSEDSMENTPP--NFFYSSNRYDS 517

Query: 573 ADRENY 590
             R NY
Sbjct: 518 TTRSNY 523


>U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical
           protein EEED8.3 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 324 TCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASG 458
           TC   N  + H HTDL  + +  T+ +  + IA +D +    A G
Sbjct: 103 TCYKMNGNQLHVHTDLLGKSLIPTIFEFDKPIARDDNAVSTHAEG 147


>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 234 TDFYYVPDGQYENIGFPPGVAEELVIKVLRTCDPK 338
           T+   +  G+Y+ IG P       V+++  TCDP+
Sbjct: 25  TEVVEIQQGKYQLIGVPQAALNGTVVQLEFTCDPE 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,358,012
Number of Sequences: 27780
Number of extensions: 415122
Number of successful extensions: 1170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)