Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C06
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.4  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/54 (27%), Positives = 17/54 (31%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP   K     PPP       +   PPP       +  PPP     G     PP
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/56 (26%), Positives = 18/56 (32%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPPXK 657
           PP   +     PPP       +   PPP       +  PPP     G     PP K
Sbjct: 288 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/54 (25%), Positives = 17/54 (31%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP   +     PPP       +   PPP       +  PPP     G     PP
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/54 (25%), Positives = 17/54 (31%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP   +     PPP       +   PPP       +  PPP     G     PP
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/54 (25%), Positives = 17/54 (31%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP   +     PPP       +   PPP       +  PPP     G     PP
Sbjct: 249 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/54 (25%), Positives = 17/54 (31%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP   +     PPP       +   PPP       +  PPP     G     PP
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/54 (25%), Positives = 17/54 (31%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP   +     PPP       +   PPP       +  PPP     G     PP
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,103
Number of Sequences: 5004
Number of extensions: 23225
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)