Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C06
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.5  
01_01_0082 + 625198-625719                                             29   4.6  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.1  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPP 663
           PP    K    PPP        K  PPP P    +   PPP  G+ G     PP
Sbjct: 336 PPPPPPKGPPPPPPA-------KGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/69 (28%), Positives = 20/69 (28%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPPXKXXGX 645
           PP   K     PPP           PPP P        PPP    GG     PP    G 
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPP--PPKGPSPPPPPPPGGKKGGPPPPPPKGG 385

Query: 644 FFXXPXGGG 618
               P   G
Sbjct: 386 ASRPPAAPG 394


>01_01_0082 + 625198-625719
          Length = 173

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = -3

Query: 824 PPXXXKKXXXXPPPXXFFFXXKKXXPP--PXPFFXKTNXXPPPXXGRG 687
           PP         PPP   ++      P   P P    TN  PPP  G G
Sbjct: 55  PPDVLPTPVYYPPPPPVYYPPPSPPPVAYPPPTTPSTNCPPPPYGGGG 102


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/59 (28%), Positives = 18/59 (30%)
 Frame = -3

Query: 824  PPXXXKKXXXXPPPXXFFFXXKKXXPPPXPFFXKTNXXPPPXXGRGGXXXXXPPXKXXG 648
            PP         PPP       +    PP P        PPP  G GG     PP    G
Sbjct: 1113 PPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRG 1171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,844
Number of Sequences: 37544
Number of extensions: 319388
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)