Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_C02
(1101 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 31 1.2
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 31 2.1
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 3.7
03_05_0067 - 20460206-20460703,20461255-20461530 30 3.7
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.0
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 6.5
07_01_0080 + 587674-588510 29 6.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 6.9
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 8.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 8.7
07_01_0516 - 3850252-3852870 29 8.7
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 29 8.7
01_06_0604 + 30536172-30537143 29 8.7
01_01_0929 - 7344911-7345978 29 8.7
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXKXP 590
PP PPPPPP F GGGG P
Sbjct: 70 PPAAFFAAVPPPPPPPFEYYPAVGGGGGFGAP 101
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXKXPP 593
PPP PPPPP F GGGG P
Sbjct: 69 PPPAAFFAAVPPPPPPPFEYYPAVGGGGGFGAP 101
Score = 26.2 bits (55), Expect(2) = 2.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 698 PPPPXFFXXXXPPPP 654
PPPP F PPPP
Sbjct: 68 PPPPAAFFAAVPPPP 82
Score = 26.2 bits (55), Expect(2) = 1.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 697 PPPPXFFXXXPPPXP 653
PPP FF PPP P
Sbjct: 69 PPPAAFFAAVPPPPP 83
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 577 PPPPXXXXXXKKXGGGGG 524
PPPP GGGGG
Sbjct: 80 PPPPPPFEYYPAVGGGGG 97
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2
Query: 578 PPPPXXXXXXKKXXGGGGG 522
PPPP GGGGG
Sbjct: 79 PPPPPPPFEYYPAVGGGGG 97
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 30.7 bits (66), Expect = 2.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXK 584
PPP PPPPPP GGG +
Sbjct: 43 PPPPSSSSSPPPPPPSSVEGRTKQPGGGGR 72
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXKXPP--XXFFXXKKKKKKK 632
PPP K PPPPPP GG P F+ K++ K
Sbjct: 933 PPPGKPGGPPPPPPPPGSLPRNLAGGDKVHRAPEVVEFYQSLMKREAK 980
Score = 29.1 bits (62), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP K PPPPPP
Sbjct: 932 PPPPGKPGGPPPPPP 946
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = -3
Query: 697 PPPPXFFXXXPPPXPXXXXXXXFFFFFFXXKKKXXGGFFXPPPPXXXXXXKKXGGGGG 524
PPPP +F PPP P +F + PPPP GG G
Sbjct: 15 PPPPQYFQAGPPPPPPQ---------YFQGAHPPAAMWGQPPPPQAAPPPAPAGGAAG 63
Score = 29.9 bits (64), Expect = 3.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXKXPP 593
PPP PPPPPP +F + PP
Sbjct: 16 PPPQYFQAGPPPPPPQYFQGAHPPAAMWGQPPP 48
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 5.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP K PPPPPP
Sbjct: 355 PPPPPKGPSPPPPPP 369
Score = 29.1 bits (62), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP K PPPPPP
Sbjct: 356 PPPPKGPSPPPPPPP 370
Score = 29.1 bits (62), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP K PPPPPP
Sbjct: 368 PPPGGKKGGPPPPPP 382
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP K PPPPPP
Sbjct: 627 PPPPGKPGGPPPPPP 641
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 6.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXFF 548
PPP PPPPPP F
Sbjct: 106 PPPPPPPPPPPPPPPPLF 123
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 522 PPPPPPXFFXXXXXXGGGGXKXPP 593
PPPPPP G G PP
Sbjct: 690 PPPPPPPLPPANRTNGPGVPSAPP 713
Score = 23.0 bits (47), Expect(2) = 6.9
Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Frame = +3
Query: 495 PPPX----KKXXXPPPPPP 539
PPP K PPPPPP
Sbjct: 652 PPPAPGIGNKFPAPPPPPP 670
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 28.7 bits (61), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP ++ PPPPPP
Sbjct: 150 PPPPQESTPPPPPPP 164
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 8.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXF 545
PPP + PPPPPP +
Sbjct: 83 PPPPQMYYQPPPPPPPY 99
>07_01_0516 - 3850252-3852870
Length = 872
Score = 28.7 bits (61), Expect = 8.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP + PPPPPP
Sbjct: 19 PPPTSRPLPPPPPPP 33
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 28.7 bits (61), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPP 539
PPP ++ PPPPPP
Sbjct: 134 PPPREQDATPPPPPP 148
>01_06_0604 + 30536172-30537143
Length = 323
Score = 28.7 bits (61), Expect = 8.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 522 PPPPPPXFFXXXXXXGGGGXK 584
PPPPPP F GG G K
Sbjct: 43 PPPPPPLAFPSYSRLGGAGGK 63
>01_01_0929 - 7344911-7345978
Length = 355
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 495 PPPXKKXXXPPPPPPXF 545
P P K PPPPPP F
Sbjct: 24 PSPPSKTRRPPPPPPPF 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,566
Number of Sequences: 37544
Number of extensions: 514177
Number of successful extensions: 5596
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4364
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3304646468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -