Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C02
         (1101 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    30   2.5  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    30   2.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.5  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   7.8  

>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 495 PPPXKKXXXPPPPPP 539
           PPP K+   PPPPPP
Sbjct: 299 PPPIKEESPPPPPPP 313



 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 495 PPPXKKXXXPPPPPP 539
           PPP  K   PPPPPP
Sbjct: 298 PPPPIKEESPPPPPP 312


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 495 PPPXKKXXXPPPPPP 539
           PPP K+   PPPPPP
Sbjct: 299 PPPIKEESPPPPPPP 313



 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 495 PPPXKKXXXPPPPPP 539
           PPP  K   PPPPPP
Sbjct: 298 PPPPIKEESPPPPPP 312


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXKXPP 593
           PPP      PPPPPP         G  G   PP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 495 PPPXKKXXXPPPPPPXFFXXXXXXGGGGXKXPP 593
           PPP      PPPPPP         G  G   PP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 706 GXXPPPPXFFXXXPPPXP 653
           G  PPPP  F   PPP P
Sbjct: 102 GGIPPPPPMFGAPPPPPP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,936
Number of Sequences: 27780
Number of extensions: 264256
Number of successful extensions: 2009
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2971275592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)