Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C01
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   0.68 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   4.8  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   6.3  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.3  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   8.4  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -3

Query: 348 RLCER--DYRCQRIHQPMVCCYCCTN*HNCQ*NSPSHCSWLETCYHF 214
           R CE+  +Y+C R H    C  C    + C      HC W + C  F
Sbjct: 97  RFCEKCQEYKCDRSHH---CSQC----NKCILRMDHHCMWFKNCVGF 136


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 229 LQPATMRWRILLTIVSVCTAIAAYHWLMDPL 321
           LQ       IL  +  VC A+AA H+L  PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 225 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSS 320
           MS  S NE   +  N  S Y N+S+P +D ++
Sbjct: 417 MSKLSLNEQPAAPSNSNSQYMNTSMPTLDSTN 448


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 228 SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 368
           S +S  ++   T + +S  S S  P  DGS D+  +AH  +  S  F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 199 ERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPV 330
           +RRL   I         W  LL +V VC  +     L+ P+ PV
Sbjct: 10  QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,431
Number of Sequences: 5004
Number of extensions: 46236
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)