Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B24
         (910 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.5  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.5  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   4.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.8  

>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 167 AITTVAINNATLTKFIFAQCINSGTGLLVPSSATFNVK 54
           A+TT  +   TL  F   +C N+   +L P+   F+V+
Sbjct: 497 ALTTRELPGETLRLFTCMECPNNYPWILEPTGDGFSVR 534


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 167 AITTVAINNATLTKFIFAQCINSGTGLLVPSSATFNVK 54
           A+TT  +   TL  F   +C N+   +L P+   F+V+
Sbjct: 490 ALTTRELPGETLRLFTCMECPNNYPWILDPTGDGFSVR 527


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +2

Query: 203 TSIKPKNCSKFSSKNITGKYKDDADRELHYQSF-----KKHLAEINQLNE 337
           +S+   NC      N T K   + ++E H+  +     +  +A   QLNE
Sbjct: 245 SSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNE 294


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +2

Query: 203 TSIKPKNCSKFSSKNITGKYKDDADRELHYQSF-----KKHLAEINQLNE 337
           +S+   NC      N T K   + ++E H+  +     +  +A   QLNE
Sbjct: 34  SSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNE 83


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +2

Query: 203 TSIKPKNCSKFSSKNITGKYKDDADRELHYQSF-----KKHLAEINQLNE 337
           +S+   NC      N T K   + ++E H+  +     +  +A   QLNE
Sbjct: 34  SSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLTRARRIEIASALQLNE 83


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 335 EKNPYTTFGINKFADYTP 388
           ++NPY + G+   A Y+P
Sbjct: 18  DQNPYPSIGVESSAFYSP 35


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 899 PXXMGGXRRGPXXNPXPRXWPIH 831
           P   GG RRGP      R  P H
Sbjct: 322 PQLAGGGRRGPGPARSRRHLPAH 344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,464
Number of Sequences: 336
Number of extensions: 3453
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)