Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B23
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0558 + 19461369-19462448                                         31   1.3  
11_06_0610 - 25449085-25453284                                         30   2.2  
01_01_0570 - 4231100-4232560                                           29   3.9  
07_03_0560 + 19479597-19480667                                         28   6.7  
01_03_0005 + 11568545-11569119,11569179-11569191                       28   6.7  
06_01_1156 + 9788711-9788759,9788910-9789142,9790146-9791919,981...    28   8.9  

>07_03_0558 + 19461369-19462448
          Length = 359

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 236 FGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           FGG    GG     VGG   F GGG GG
Sbjct: 81  FGGGGGLGGGASGGVGGGGGFGGGGGGG 108



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 215 GXPQXFXFGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           G  Q   FGG    GG     +GG   F GGG GG
Sbjct: 110 GGGQGGGFGGGAGAGGGAGGGLGGGGGFGGGGGGG 144



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 236 FGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           FGG    GG     VGG   F GGG GG
Sbjct: 295 FGGGAGVGGGAGGGVGGGGGFGGGGGGG 322



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 212 GGXPQXFXFGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           GG      FG     GG     VGG   F GGG GG
Sbjct: 147 GGGGHGGGFGAGGGVGGGAGGGVGGGGGFGGGGGGG 182



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 212 GGXPQXFXFGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           GG  +   FGG    GG     +GG     GGG GG
Sbjct: 44  GGFGEGEGFGGGGGFGGGGGGGLGGGGGGLGGGHGG 79



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 236 FGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           FGG    GG     VGG   F GGG  G
Sbjct: 191 FGGGAGVGGGAGGGVGGGGGFGGGGGSG 218



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 236 FGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           FGG    G      VGG   F GGG GG
Sbjct: 259 FGGGAGVGSGAGGGVGGGGGFGGGGGGG 286



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 236 FGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           FG     GG     VGG   F GGG GG
Sbjct: 331 FGAGAGVGGGAGGGVGGGGGFGGGGGGG 358


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -3

Query: 309  PPPKXFXAPPTXARXIPP--HXXSPPKXKXWGXPPXXFVLPXXKXK 178
            PPP     PP   + +PP     SPP  +    PP   +LP    K
Sbjct: 1121 PPPATVSLPPPTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIK 1166


>01_01_0570 - 4231100-4232560
          Length = 486

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 239 GGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           GG    GG+    +GG+  F GGG GG
Sbjct: 95  GGLGGSGGLGGGGMGGSGGFGGGGGGG 121


>07_03_0560 + 19479597-19480667
          Length = 356

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 236 FGGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           FGG+   GG     +GG   F GGG  G
Sbjct: 67  FGGDGGFGGGGGGGLGGGGGFGGGGGAG 94


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 647 GGGXXXXXXXXPPPPXXXXYXFFFFFPXPP 736
           GGG        PP P    + F+++ P PP
Sbjct: 131 GGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160


>06_01_1156 +
           9788711-9788759,9788910-9789142,9790146-9791919,
           9819418-9819743
          Length = 793

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 239 GGEXXXGGIXRAXVGGAXXFXGGGXGG 319
           GGE   GG  R   GG     GGG GG
Sbjct: 688 GGEEAGGGGLREEAGGGGLGRGGGAGG 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,698,117
Number of Sequences: 37544
Number of extensions: 208171
Number of successful extensions: 929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)