Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B23
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X12517-1|CAA31037.1|  159|Homo sapiens protein ( Human mRNA for ...    30   7.5  
BC121083-1|AAI21084.1|  159|Homo sapiens small nuclear ribonucle...    30   7.5  
BC121082-1|AAI21083.1|  159|Homo sapiens small nuclear ribonucle...    30   7.5  
AL139100-4|CAI20352.1|  118|Homo sapiens small nuclear ribonucle...    30   7.5  
AL139100-3|CAI20351.1|  180|Homo sapiens small nuclear ribonucle...    30   7.5  
AL139100-2|CAI20350.1|  159|Homo sapiens small nuclear ribonucle...    30   7.5  
AK223098-1|BAD96818.1|  159|Homo sapiens small nuclear ribonucle...    30   7.5  

>X12517-1|CAA31037.1|  159|Homo sapiens protein ( Human mRNA for U1
           small nuclear RNP-specific C protein. ).
          Length = 159

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 78  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 110


>BC121083-1|AAI21084.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 78  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 110


>BC121082-1|AAI21083.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 78  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 110


>AL139100-4|CAI20352.1|  118|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 118

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 37  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 69


>AL139100-3|CAI20351.1|  180|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 99  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 131


>AL139100-2|CAI20350.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 78  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 110


>AK223098-1|BAD96818.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C variant protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 309 PPPKXFXAPPTXARXIPPHXXSPPKXKXWGXPP 211
           PPP     PP       PH   PP     G PP
Sbjct: 78  PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,631,885
Number of Sequences: 237096
Number of extensions: 1100527
Number of successful extensions: 2401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)