Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_B21
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 30 2.0
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 29 6.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 8.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 8.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 24 8.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 24 8.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 24 8.4
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 25 9.5
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 886 NPRGXWGGXIXEGFQGNXXRGPKXGXXGFXGGD 788
+PRG GG G G P+ G GF GGD
Sbjct: 5 SPRGRGGGGFRGGRGGGSGFTPRGGGGGFRGGD 37
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 913 FGXGFGPRANP-RGXWGGXIXEGFQGNXXRGPKXGX-XGFXGGDG 785
FG G G P RG +GG G G GP G GF GG G
Sbjct: 49 FGGGPGSNYGPGRGGFGGNGGFGGNGGFGGGPSYGGRGGFGGGPG 93
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 904 GFGPRANPRGXWGGXIXEGFQGNXXRGPKXGXXGFXGGDGXDFK 773
G G RG +G GF+G G G GF GGD F+
Sbjct: 166 GRGSDRGGRGGFGRGGGGGFRGGDRGGFGGGRGGFRGGDRGGFR 209
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -2
Query: 898 GPRANPRGXWGGXIXEGFQGNXXRGPKXGXXGFXGGDGXDFKXPGXKG 755
GP NP G G G G R G G+ GG G + PG +G
Sbjct: 613 GPMENPAGIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQN-GFPGLQG 659
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -2
Query: 898 GPRANPRGXWGGXIXEGFQGNXXRGPKXGXXGFXGGDGXDFKXPGXKG 755
GP NP G G G G R G G+ GG G + PG +G
Sbjct: 612 GPMENPAGIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQN-GFPGLQG 658
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 864 PPQXPRGFALGPKPXP 911
PP P GF GP P P
Sbjct: 773 PPPPPGGFKGGPPPPP 788
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +3
Query: 606 PGFPGXXXGLNPPGXTFXXXPLNKXPPCXKXPQLVXGFXPXLNXSXXXPXPXKPG 770
PG P G PP P+ PP P G P ++ P P G
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPP----GGLPPISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 864 PPQXPRGFALGPKPXP 911
PP P GF GP P P
Sbjct: 773 PPPPPGGFKGGPPPPP 788
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +3
Query: 606 PGFPGXXXGLNPPGXTFXXXPLNKXPPCXKXPQLVXGFXPXLNXSXXXPXPXKPG 770
PG P G PP P+ PP P G P ++ P P G
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPP----GGLPPISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 23.8 bits (49), Expect(2) = 8.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 864 PPQXPRGFALGPKPXP 911
PP P GF GP P P
Sbjct: 356 PPPPPGGFKGGPPPPP 371
Score = 22.6 bits (46), Expect(2) = 8.4
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +3
Query: 606 PGFPGXXXGLNPPGXTFXXXPLNKXPPCXKXPQLVXGFXPXLNXSXXXPXPXKPG 770
PG P G PP P+ PP P G P ++ P P G
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPP----GGLPPISGGPPPPPPPPGG 350
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 25.4 bits (53), Expect(2) = 9.5
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -2
Query: 883 PRGXWGGXIXEGFQGNXXRGPKXGXXGFXGGDGXDFK--XPGXKG 755
PRG G EG G+ + G G G DG K PG KG
Sbjct: 140 PRGPPGPQGEEGPSGDVGEDGEPGVPGNDGADGTPGKSGAPGGKG 184
Score = 21.0 bits (42), Expect(2) = 9.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 646 PGGLRPNXWPGKPG 605
PGG P PG PG
Sbjct: 180 PGGKGPQGPPGTPG 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,838,123
Number of Sequences: 27780
Number of extensions: 132461
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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