Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B20
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   0.91 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    29   1.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   6.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   6.4  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 317 VNYTILHKIIQNL--RQSFFRTHCVTLTENMRSVIQ 216
           V+  +   +I+NL   + F RTHCV LT N  +V++
Sbjct: 734 VDQHVSRDLIKNLFGPEGFLRTHCVVLTTNSLNVLK 769


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 266  KNFVEDFELSCVKLCNSPAAVGSH--FAQTF*RCALNPSRASSLVIRGPCDID 418
            K  + +F  S ++LC+ PA        A T  RC    + +SS V+ G CD+D
Sbjct: 1117 KEILINFLDSFIRLCHLPAKTHDERVTAVTVIRCTQIVALSSSCVMAGYCDLD 1169


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 366 NAHRQKVCAKCDPTAAGELHNFTQDNSKSSTK 271
           NA +Q V  K  PT   +L  F Q+N   STK
Sbjct: 324 NAIKQLVFDKLPPTICMQLKRFEQNNFAMSTK 355


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 172 SLSNTETLFGSRPVRTKAARAIRLM 98
           SLS T TL G R V   AAR ++LM
Sbjct: 7   SLSFTNTLSGKRNVLRPAARELKLM 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,667
Number of Sequences: 5004
Number of extensions: 48470
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)