Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B19
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 17/72 (23%), Positives = 26/72 (36%)
 Frame = -1

Query: 723 RXRHASXREKGGQVSGKRQGRNRRAHEGAFQGXTPGIFIVLSGFATSDLSVDFCDARQGG 544
           +  H S   KG  +    Q   R   +    G TP  F + +    +   +D   +R+G 
Sbjct: 597 KREHRSSSTKGITIQEPPQWHTRSTEKRVSAG-TPAAFNISTTIYENQNCLDASSSRRGS 655

Query: 543 GAYGKTPATRPF 508
                TPA   F
Sbjct: 656 KIGSPTPAESTF 667


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
 Frame = +1

Query: 469 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLESS 642
           T      +R   V +PR   WR +I S           ++  G + +D+K TR     + 
Sbjct: 382 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 441

Query: 643 LVRSPVPTLPLTGYLSAFLPSGSVAXSHXSRCXYFXSVXVVRSXLGCVH 789
            +R  V   P    +  ++       +      +F S  VV S L  VH
Sbjct: 442 ALRRFVEGYPHA--VPKYIQRLKAIRATLKASPFFASHEVVGSSLLFVH 488


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
 Frame = +1

Query: 469 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLESS 642
           T      +R   V +PR   WR +I S           ++  G + +D+K TR     + 
Sbjct: 297 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 356

Query: 643 LVRSPVPTLPLTGYLSAFLPSGSVAXSHXSRCXYFXSVXVVRSXLGCVH 789
            +R  V   P    +  ++       +      +F S  VV S L  VH
Sbjct: 357 ALRRFVEGYPHA--VPKYIQRLKAIRATLKASPFFASHEVVGSSLLFVH 403


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
 Frame = +1

Query: 469 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLESS 642
           T      +R   V +PR   WR +I S           ++  G + +D+K TR     + 
Sbjct: 616 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 675

Query: 643 LVRSPVPTLPLTGYLSAFLPSGSVAXSHXSRCXYFXSVXVVRSXLGCVH 789
            +R  V   P    +  ++       +      +F S  VV S L  VH
Sbjct: 676 ALRRFVEGYPHA--VPKYIQRLKAIRATLKASPFFASHEVVGSSLLFVH 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,040
Number of Sequences: 438
Number of extensions: 4460
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)