Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B18
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   3.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   4.9  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   8.6  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   8.6  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 239 GIRCQKCLEFGHWSYECK 292
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = +2

Query: 233 PQGIRCQKCLEFGHWSYEC--------KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 379
           P G  C +C + GHW   C         GK ++       R   KN++   EG  +N
Sbjct: 180 PPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEGDAAN 236


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 643 NLMLVYYCLV*FLFXTNLYFQILIFLFPYFLTNLFILSSNSFIE 774
           +L+ VY  +V  L  +  YF  L   FPY  T +FI + +SFIE
Sbjct: 105 SLISVYIGIVISLLVSLFYFYSLPN-FPYSKTCIFIYTVSSFIE 147


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 178 CSQSHIQNLKGKINKIRG*LNICLELYCSNCNRPFY 71
           CS  +  N K K+      +  C   +CSNC  PFY
Sbjct: 639 CSVCNFSNWKSKL------IPNCGHAFCSNCMEPFY 668


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 770 MKEFEERINKLVRK*GN 720
           +KE+EE+++ L+RK GN
Sbjct: 396 LKEYEEKVHNLLRKLGN 412


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 184 VICSQSHIQNLKGKINKIRG*LNICLELYCSNCNRPFY*NLSQ 56
           +I S++ I +L   +NKI+  L IC E+  +N   P+   L Q
Sbjct: 357 IISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPWSFQLKQ 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,280
Number of Sequences: 5004
Number of extensions: 50133
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)