Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B14
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    61   2e-10
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    33   0.073
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    32   0.13 
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    27   2.8  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   6.4  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   8.4  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   8.4  

>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = +3

Query: 219 YNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEF 368
           Y+ L++ CF+DC+ DFTS  L + E +C   C +K+L+ ++RV QRF EF
Sbjct: 28  YSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAEF 77


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 222 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 359
           +K++E CF+ CI +  S T    E  C   CME+Y+     VS+ +
Sbjct: 39  SKINENCFDKCIPEPGS-TFDPNEKSCVSKCMERYMDAWNIVSRTY 83


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 222 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 359
           ++ +  C+  CI +  ++  KS E++C  NC+E++L  N  + +R+
Sbjct: 38  HQFTSTCWPKCIGNIGNKLDKS-EEQCLQNCVERFLDCNFHIIKRY 82


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 188 FDQLHSSFQGSPFLY-IFKKSLEQCDCLVFLQYLNXIKY 75
           + +L+  +QGSPF + +F  +  +  C  ++Q+L    Y
Sbjct: 131 YKELYKDWQGSPFFFALFSNAFGENQCRNWIQHLAPFDY 169


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 363 EFQMLANENMLALAQKSGNPS*KVWYICDLSSHFL*GVVRESTPYIMIYLCKCTV 527
           EF  LA+  +  L Q   +P+   +Y    S  FL         YI+I LCKC +
Sbjct: 687 EFYDLASREITLLQQSDNHPNIVRYYCKQKSDQFL---------YIVIELCKCNL 732


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 222 NKLSELCFNDCIHDFTSRTLKSTEDKCTV 308
           NK++ LCF D I D +  ++K T  KC +
Sbjct: 81  NKIASLCFEDVI-DTSHVSIKLTLPKCVL 108


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 336 NQRVSQRFHEFQMLANENMLALAQ 407
           N RVS+R HEFQ    + + +L Q
Sbjct: 189 NLRVSKRVHEFQEFFGDGITSLTQ 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,718
Number of Sequences: 5004
Number of extensions: 41577
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)