Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B14
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-11|AAB03140.1|   90|Caenorhabditis elegans Transport to i...    77   2e-14
AF150108-1|AAD40014.1|   90|Caenorhabditis elegans small zinc fi...    77   2e-14
U61947-12|AAO44913.1|   78|Caenorhabditis elegans Transport to i...    75   9e-14
Z73422-9|CAI46556.1|  111|Caenorhabditis elegans Hypothetical pr...    50   3e-06
AF150109-1|AAD40015.1|  111|Caenorhabditis elegans small zinc fi...    50   3e-06
Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc fi...    30   2.6  
Z81491-3|CAB04018.1|  194|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>U61947-11|AAB03140.1|   90|Caenorhabditis elegans Transport to
           inner mitochondrialmembrane (yeast tim) protein 9.1,
           isoform a protein.
          Length = 90

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +3

Query: 216 QYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEFQML-ANENM 392
           QYN ++E CFN C+++F SRT+   E+ C  NC++K+L+M QRVSQRF E Q+L A  N 
Sbjct: 16  QYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQEHQLLNAQANG 75

Query: 393 LALAQKSGNPS*KV 434
            A+  ++G    K+
Sbjct: 76  AAIKVENGGKINKI 89


>AF150108-1|AAD40014.1|   90|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 90

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +3

Query: 216 QYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEFQML-ANENM 392
           QYN ++E CFN C+++F SRT+   E+ C  NC++K+L+M QRVSQRF E Q+L A  N 
Sbjct: 16  QYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQEHQLLNAQANG 75

Query: 393 LALAQKSGNPS*KV 434
            A+  ++G    K+
Sbjct: 76  AAIKVENGGKINKI 89


>U61947-12|AAO44913.1|   78|Caenorhabditis elegans Transport to
           inner mitochondrialmembrane (yeast tim) protein 9.1,
           isoform b protein.
          Length = 78

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 29/54 (53%), Positives = 41/54 (75%)
 Frame = +3

Query: 216 QYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEFQML 377
           QYN ++E CFN C+++F SRT+   E+ C  NC++K+L+M QRVSQRF E Q+L
Sbjct: 16  QYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQEHQLL 69


>Z73422-9|CAI46556.1|  111|Caenorhabditis elegans Hypothetical
           protein B0564.1b protein.
          Length = 111

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +3

Query: 219 YNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHE 365
           YN LSE CFN C  D+T+ TL   E  C   C++K + +N+R    F E
Sbjct: 17  YNTLSERCFNACARDYTTSTLTKDEGSCVSQCIDKQMLVNRRFMLVFAE 65


>AF150109-1|AAD40015.1|  111|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 111

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +3

Query: 219 YNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHE 365
           YN LSE CFN C  D+T+ TL   E  C   C++K + +N+R    F E
Sbjct: 17  YNTLSERCFNACARDYTTSTLTKDEGSCVSQCIDKQMLVNRRFMLVFAE 65


>Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical
           protein DY3.1 protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 228 LSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQ 353
           +SE C N CI      +L S E +C   CM++++     VSQ
Sbjct: 41  ISEKCTNKCI-TAPGSSLASGEKQCLQRCMDRFMESWNLVSQ 81


>AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 228 LSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQ 353
           +SE C N CI      +L S E +C   CM++++     VSQ
Sbjct: 41  ISEKCTNKCI-TAPGSSLASGEKQCLQRCMDRFMESWNLVSQ 81


>Z81491-3|CAB04018.1|  194|Caenorhabditis elegans Hypothetical
           protein D1086.3 protein.
          Length = 194

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 252 CIHDFTSRTLKSTEDKCT 305
           C+ DF S T KST+D CT
Sbjct: 130 CLEDFKSETKKSTKDTCT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,319
Number of Sequences: 27780
Number of extensions: 233195
Number of successful extensions: 520
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)