Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_B13
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 30 0.45
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 27 2.4
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.6
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 26 7.4
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 26 7.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.4
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 7.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 7.4
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 7.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.7
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 25 9.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 421 PVPISETSEAATSALPMTTTAVCTASFASVPGTSGVDNL 537
P+P + TS T++ P+ TT+ + S+P T G +L
Sbjct: 149 PIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSL 187
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 421 PVPISETSEAATSALPMTTTAVCTASFASVPGTSGVDNL 537
P+P + TS T++ P+ TT+ + S+P T G +L
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIP-TGGSSSL 243
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 421 PVPISETSEAATSALPMTTTAVCTASFASVPGT 519
P+P + TS T++ P+ TT+ + S+P T
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPT 294
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 397 TGLPRNPAPVPISETSEAATSALPMTTTAVCTASFASVPGT 519
T P P + TS TS+ P+ +T+ + S+P T
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPT 348
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 397 TGLPRNPAPVPISETSEAATSALPMTTTAVCTASFASVPGT 519
T P P + TS TS+ P+ +T+ + S+P T
Sbjct: 362 TSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPT 402
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 286 KSNVKDVYICSRHFDDKCFNKTMDVIRLRDDAVPSKFTGLPRNPAPVP 429
KS +K + R+ C DVIR+ +D + + T + RNP+ P
Sbjct: 863 KSLIKLYKVLHRYSQRDCVEVIPDVIRMFEDRLQLELTDIARNPSKWP 910
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 385 PSKFTGLPRNPAPVPISETSEAATSALPM---TTTAVCTASFASVP 513
PSKF +P P P+ S+ +TS P T +V ++ S P
Sbjct: 333 PSKFKSIPITSNPPPMLNLSKGSTSVEPTFCETNASVALSTVTSTP 378
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 385 PSKFTGLPRN-PAPVPISETSEAATSALPMTTTAVC--TASFASVPGTSGVDNLLIQT 549
P + T LP P+ P + + + + TA+ A+F S+ + G DNL IQT
Sbjct: 181 PRRSTELPSKIPSSTPKDDNVQESPAFPDENITALQKNVANFTSIKDSGGRDNLYIQT 238
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 376 DAVPSKFTGLPRNPAPVPISETSEAATSALPMTTTAVCTAS---FASVPGTSGVDNLLIQ 546
DAV + +T + P PV + T AL + T T + F + G++G+ N+ Q
Sbjct: 117 DAVFAMYTTISNYPEPVTLVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQ 176
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +1
Query: 235 NESRKK-KWL---EAIRMENIKSNVKDVYICSRHFDDKCFNKTMDVIRLRDDAVPSKFTG 402
NE+ KK +W +++ ++ +Y+C +D K N + + + S
Sbjct: 136 NENSKKIEWTWSNQSLHTLYFRNGGSPIYLCFAEYD-KRLNCLVPLKTFQFYVTESDQDS 194
Query: 403 LPRNPAPVPISETSEAATS 459
P P P+P+ E ATS
Sbjct: 195 TPATPFPMPMHLAEETATS 213
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 427 PISETSEAATSALPMTTTAVCTASFASVPGTSGVDNLL 540
P+S S+ ATS LP +T+ S P ++ +LL
Sbjct: 102 PVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLL 139
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -2
Query: 256 TFSFYSHFLGSCVWLKMA--DLVF 191
TF S F CVWLK DLVF
Sbjct: 645 TFGLLSSFTKHCVWLKFRNFDLVF 668
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 397 TGLPRNPAPVPISETSEAATSALP---MTTTAVCTASFASVPGTS 522
+GLP + A P+S ++ A TS TT+ S AS P ++
Sbjct: 629 SGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSN 673
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 184 KKKTPNQPSLTIHRIPRNESRKKKWLEAIRMENIKSNVKDVYICSRHFDDKCFNKTMDVI 363
KK++P + I + KK+ + +E K+N K + S + K D
Sbjct: 38 KKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYK-ILQKSNDETAQAMRKMQDQA 96
Query: 364 RLRD 375
RLRD
Sbjct: 97 RLRD 100
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 167 CNRVRQKKKHQISHL*PYTGSQ 232
C RV +++HQ+ H+ +TG +
Sbjct: 9 CKRVFHRQEHQVRHIRSHTGEK 30
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 391 KFTGLPRNPAPVPISETSEAATSALPMTTTAVCTASFASVPGT 519
+F+ R PA VP+SE E S + + + PG+
Sbjct: 979 RFSAALRQPASVPLSEKYEYVESVIKLLEMESYAEAIIGTPGS 1021
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 217 IHRIPRNESRKKKWLEAIRMENIKSNVKDVYICSRHFDDKCFNK--TMDVIRLRDDAVPS 390
I + NE +++ E R + ++ S + +K F K T D++RLR+
Sbjct: 216 IDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFTKMFTKDIVRLREVPDAW 275
Query: 391 KFTGLPRNPAPVPISETSEAATS 459
+ P+ + + E +E ATS
Sbjct: 276 TYRSPPKELSYSELLENAEKATS 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,384
Number of Sequences: 5004
Number of extensions: 58290
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -