Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_B13
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 34 0.11
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 34 0.11
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 34 0.11
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 33 0.24
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 33 0.24
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 33 0.24
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 33 0.24
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 33 0.24
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 33 0.24
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 33 0.24
U32305-6|AAV58892.1| 411|Caenorhabditis elegans Hypothetical pr... 33 0.32
U32305-5|AAK18855.2| 501|Caenorhabditis elegans Hypothetical pr... 33 0.32
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 32 0.56
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 30 2.3
U23521-8|AAC46810.4| 505|Caenorhabditis elegans Hypothetical pr... 28 9.2
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 223 RIPRNESRKKKWLEAIRME---NIKSNVKDVYICSRHFDDKCFNKTMDVIR-LRDDAVPS 390
R+PR+E R +W++ + E + +N +++ IC HF D F+ +++ + DA P
Sbjct: 1153 RVPRSEERLARWVDKLGPEFEARLHTNTENL-ICRSHFPDAAFSSRGRLLKGMIPDAAPE 1211
Query: 391 K 393
K
Sbjct: 1212 K 1212
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 223 RIPRNESRKKKWLEAIRME---NIKSNVKDVYICSRHFDDKCFNKTMDVIR-LRDDAVPS 390
R+PR+E R +W++ + E + +N +++ IC HF D F+ +++ + DA P
Sbjct: 1153 RVPRSEERLARWVDKLGPEFEARLHTNTENL-ICRSHFPDAAFSSRGRLLKGMIPDAAPE 1211
Query: 391 K 393
K
Sbjct: 1212 K 1212
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 223 RIPRNESRKKKWLEAIRME---NIKSNVKDVYICSRHFDDKCFNKTMDVIR-LRDDAVPS 390
R+PR+E R +W++ + E + +N +++ IC HF D F+ +++ + DA P
Sbjct: 1153 RVPRSEERLARWVDKLGPEFEARLHTNTENL-ICRSHFPDAAFSSRGRLLKGMIPDAAPE 1211
Query: 391 K 393
K
Sbjct: 1212 K 1212
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 223 RIPRNESRKKKWLEAIRME---NIKSNVKDVYICSRHFDDKCFNKTMDVIR-LRDDAVPS 390
R+PR+E R +W++ + E + +N +++ IC HF D F+ +++ + DA P
Sbjct: 1153 RVPRSEERLARWVDKLGPEFEARLHTNTENL-ICRSHFPDAAFSSRGRLLKGMIPDAAPE 1211
Query: 391 K 393
K
Sbjct: 1212 K 1212
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 223 RIPRNESRKKKWLEAIRME---NIKSNVKDVYICSRHFDDKCFNKTMDVIR-LRDDAVPS 390
R+PR+E R +W++ + E + +N +++ IC HF D F+ +++ + DA P
Sbjct: 1153 RVPRSEERLARWVDKLGPEFEARLHTNTENL-ICRSHFPDAAFSSRGRLLKGMIPDAAPE 1211
Query: 391 K 393
K
Sbjct: 1212 K 1212
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1008 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1067
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1068 RRVPSPTPSSLSSQSAGSA 1086
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 232 RNESRKKKWLEAIRMENIKSNVKDVYICSR--HFDDKCFNKTMDVIRLRDDAVPSKFTGL 405
+N+ RKK + +A+ + +KS ++ +++ D ++ V A S +
Sbjct: 1131 QNQPRKKVYEQALMVRKVKSYLEGLHVVDNEMELDSMSYDIEPQVQTAHRGANSSSTANI 1190
Query: 406 PRNPAPVPISETSEAATSA 462
R P+P P S +S++A SA
Sbjct: 1191 RRVPSPTPSSLSSQSAGSA 1209
>U32305-6|AAV58892.1| 411|Caenorhabditis elegans Hypothetical
protein B0336.7b protein.
Length = 411
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 211 LTIHRIPRNESRKKKWLEAIRMEN--IKSNVKDVYICSRHFDDKCFNKTMDVIRLRDDAV 384
+ + + P++E K++WL R+ ++S ++ YIC HF + D + DD +
Sbjct: 57 IRLFKWPKSEELKEQWLHFFRLPATVLQSATQEPYICCYHF-------SADTFVMIDDRI 109
Query: 385 PSKFTGLPR 411
K T LP+
Sbjct: 110 FWKMTALPK 118
>U32305-5|AAK18855.2| 501|Caenorhabditis elegans Hypothetical
protein B0336.7a protein.
Length = 501
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 211 LTIHRIPRNESRKKKWLEAIRMEN--IKSNVKDVYICSRHFDDKCFNKTMDVIRLRDDAV 384
+ + + P++E K++WL R+ ++S ++ YIC HF + D + DD +
Sbjct: 147 IRLFKWPKSEELKEQWLHFFRLPATVLQSATQEPYICCYHF-------SADTFVMIDDRI 199
Query: 385 PSKFTGLPR 411
K T LP+
Sbjct: 200 FWKMTALPK 208
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 406 PRNPAPVPISETSEAATSALPMTTTAVCTASFASVPGTSGVDNLLIQTHKIKKLEDNVI 582
P NP + I+ T ++A+S TTTA+ +++++ P T T + KL+ N+I
Sbjct: 535 PNNPF-ISITTTPDSASSQKISTTTAISHSAYSASPSTIPTTTPYDLTKPLPKLDCNII 592
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 361 IRLRDDAVPSKFTGLPRNPAPVPISETSEAATSALPMTTT 480
++L +P++F P NP + + T A T+ +P+TTT
Sbjct: 8 VKLAAACIPTQFV-TPLNPGTITTTTTISAPTTTVPITTT 46
>U23521-8|AAC46810.4| 505|Caenorhabditis elegans Hypothetical
protein F41C3.3 protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -1
Query: 578 TLSSSFFILCVWISRLSTPEVPGTEAKEAVHTAVVVMGSADVAASEVSEIGTGAGFRGRP 399
T +++ +I C+ I L P PG EA H S V+ +E E+ + R
Sbjct: 83 TDTAALYIACLQIGALYIPVNPGYTESEAAHYIKDATPSILVSCNE--ELDKVFRDKIRV 140
Query: 398 VNFEGTASSRSRITSIVLLKHL 333
+N + AS + + +++H+
Sbjct: 141 INEDKLASEAGSLNACTMIEHV 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,947
Number of Sequences: 27780
Number of extensions: 341506
Number of successful extensions: 1027
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -