Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B13
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.36 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +1

Query: 376 DAVPSKFTGLPRNPAPVPISETSEAAT---SALPMTTTAVCTASFASVPGTSGVDNLLIQ 546
           D VP     +   P   P S TS  AT   +    TTT    A+ A+   T  +    +Q
Sbjct: 80  DPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQ 139

Query: 547 TH 552
            H
Sbjct: 140 RH 141


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 193 TPNQPSLTIHRIPRNESRKKKWL 261
           TPNQPS         E+ K  WL
Sbjct: 225 TPNQPSAQCEATTMQENDKMSWL 247


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +2

Query: 191 KHQISHL*PYTGSQEMRVERKSGWKPLEWKI*SQM*KMFIFARDILMINVSTKLWM*FDY 370
           ++++ H+  Y   + MR+E       L+    S +  +F     +L++N+S      FDY
Sbjct: 511 RNKVQHVERYAFERNMRLEAIR----LDGNFLSDINGVFTSIASLLLLNLSENHIEWFDY 566

Query: 371 EMMPCPRNLLASHG 412
             +P     L  HG
Sbjct: 567 AFIPGNLKWLDIHG 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,462
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)