Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B12
         (1194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.32 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   9.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 1028 PPXXXPPPPPPXXXXXXXXXXPPPXGG 1108
            PP   PPPPPP          PPP  G
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 30.3 bits (65), Expect = 0.55
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -3

Query: 991 GXXPPPPXXXXXPPPXFGPXXXXPPPKKXXXXKK 890
           G  PPPP     PPP F P    PPP      KK
Sbjct: 7   GNPPPPP-----PPPGFEPPSQPPPPPPPGYVKK 35



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 979  GGAXPPXXXGGGXXXXPPXXXPPPPPPXXXXXXXXXXPAPXG 1104
            G   PP    G     PP   PPPPPP          PA  G
Sbjct: 7    GNPPPPPPPPG---FEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 1031 PXXXPPPPPPXXXXXXXXXXPPPXGGG 1111
            P   PPPPPP          PPP   G
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 1032 GGXXXXPPPPXXGGGGXPXPXXXXPPRPP 946
            GG    PPPP   G G P P    PP PP
Sbjct: 759  GGPPPPPPPPGVAGAGPPPP----PPPPP 783



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +1

Query: 979  GGAXPPXXXGGGXXXXPPXXXPPPPPPXXXXXXXXXXPAP 1098
            GG  PP    G     PP   PPPPP           PAP
Sbjct: 759  GGPPPPPPPPGVAGAGPPPP-PPPPPAVSAGGSRYYAPAP 797



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 1015 PPPPXEXGGXXPPPPXXXXXPPP 947
            PPPP    G  PPPP     PPP
Sbjct: 764  PPPPPGVAGAGPPPP---PPPPP 783



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -3

Query: 1015 PPPPXEXGGXXPPPPXXXXXPPPXFGPXXXXPPP 914
            PPPP        P P     P P  G     PPP
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 1015 PPPPXEXGGXXPPPPXXXXXPPPXFGPXXXXPPP 914
            PPPP        P P     PPP   P    PPP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPP--APIMGGPPP 763


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 1006 PXEXGGXXPPPPXXXXXPPPXFGPXXXXPP 917
            P +     PPPP     PPP   P    PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 24/72 (33%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
 Frame = +3

Query: 801  GXPPPXXXXFFXXGGLXPXGGKXXXXXXXFFXXXXXFFGG-GXSXXGPXXGGGXXXXXGG 977
            G PPP    F   GG    G         F      F GG G    GP   GG     GG
Sbjct: 198  GGPPPGPGGFGGFGGFGGEG-HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256

Query: 978  GGXXPPXSXGGG 1013
            G    P   GGG
Sbjct: 257  G----PGGFGGG 264



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = -1

Query: 1116 PPPPPXG-GGXXXXXXXXXXGGGGGGXXXGGXXXXPPPPXXGGG 988
            PPP P G GG           GG GG   G       P   GGG
Sbjct: 200  PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 948  GGGXXXXXGGGGXXPPXSXGGGG 1016
            GGG     GG G  PP   G GG
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGG 209


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
 Frame = -3

Query: 1015 PPPPX--EXGGXXPPPP----XXXXXPPPXF--GPXXXXPPP 914
            PPPP   E G   PPPP         PPP     P    PPP
Sbjct: 221  PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
 Frame = -3

Query: 1015 PPPPX--EXGGXXPPPP----XXXXXPPPXF--GPXXXXPPP 914
            PPPP   E G   PPPP         PPP     P    PPP
Sbjct: 247  PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
 Frame = -3

Query: 1015 PPPPX--EXGGXXPPPP----XXXXXPPPXF--GPXXXXPPP 914
            PPPP   E G   PPPP         PPP     P    PPP
Sbjct: 273  PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
 Frame = -3

Query: 1015 PPPPX--EXGGXXPPPP----XXXXXPPPXF--GPXXXXPPP 914
            PPPP   E G   PPPP         PPP     P    PPP
Sbjct: 299  PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 1015 PPPPXEXGGXXPPPPXXXXXPPP 947
            PPP     G  P PP     PPP
Sbjct: 341  PPPRSNAAGSIPLPPQGRSAPPP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,161
Number of Sequences: 5004
Number of extensions: 44303
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)