Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B10
         (1138 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.5  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    30   3.5  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   3.5  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXFFF 534
           PPPP  GG K   PPPP    F
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMF 793



 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXFFF 533
           P PPP    G K   PPPPP   F
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPGMF 793



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXFFFXXXXXXXFVGGXPXPP 581
           P PPP    G     PPPPP           F GG P PP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPP---------GGFKGGPPPPP 788



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXFF 531
           PPPP  GG     PPPP   F
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGF 780


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXFFF 534
           PPPP  GG K   PPPP    F
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMF 793



 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXFFF 533
           P PPP    G K   PPPPP   F
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPGMF 793



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXFFFXXXXXXXFVGGXPXPP 581
           P PPP    G     PPPPP           F GG P PP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPP---------GGFKGGPPPPP 788



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXFF 531
           PPPP  GG     PPPP   F
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGF 780


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXFFF 534
           PPPP  GG K   PPPP    F
Sbjct: 355 PPPPPPGGFKGGPPPPPPPGMF 376



 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXFFF 533
           P PPP    G K   PPPPP   F
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPPGMF 376



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXFFFXXXXXXXFVGGXPXPP 581
           P PPP    G     PPPPP           F GG P PP
Sbjct: 341 PPPPPPPPGGCPPPPPPPPP---------GGFKGGPPPPP 371



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXFF 531
           PPPP  GG     PPPP   F
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGF 363


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 469 PPPPXXGGXKKXXPPPPXXF 528
           PPPP  GG +   PPPP  +
Sbjct: 43  PPPPCGGGYEAPPPPPPPSY 62



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 462 PXPPPXXXRGXKKXXPPPPPXF 527
           P PPP    G +   PPPPP +
Sbjct: 41  PPPPPPCGGGYEAPPPPPPPSY 62


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +3

Query: 468 PPPXXXRGXKKXXPPPPPXFFFXXXXXXXFVGGXPXPP 581
           PPP    G     PPPPP F          +GG P PP
Sbjct: 75  PPPPGPGGI----PPPPPMFAGGIPPPPPMMGGIPPPP 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,688,800
Number of Sequences: 27780
Number of extensions: 154602
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)