Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_B08
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 36 0.059
11_01_0545 + 4308167-4308496 32 0.72
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 32 0.72
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 31 1.7
04_03_1017 + 21747044-21748051 31 1.7
02_02_0183 + 7576901-7576908,7577666-7578176 31 1.7
12_02_0010 - 12275652-12276221,12276804-12276935 30 2.9
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 29 3.8
01_05_0602 + 23577328-23579805 29 3.8
02_05_1008 - 33461225-33462334 29 5.1
01_01_0650 - 4948852-4950012 29 5.1
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 28 8.9
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 35.5 bits (78), Expect = 0.059
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 325 PRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQE 501
PRRHR P + R RR A+ + P PP + P +TP T N R + E
Sbjct: 13 PRRHRHGPATPRRRRRRHAAAVATPPPPPPRRRANRCPDAATPPLTNENENDRTNESENE 72
Query: 502 KLRT 513
RT
Sbjct: 73 NDRT 76
>11_01_0545 + 4308167-4308496
Length = 109
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 308 CRATCRREGTGSRPRCRRPGQEGGRAYWWSREIRQRCC 421
C + TG RCR G G A W S++I+ CC
Sbjct: 61 CIPVAACDDTGCAIRCRDLGYNPGSACWTSKDIKLYCC 98
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 31.9 bits (69), Expect = 0.72
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +1
Query: 241 ESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTML 420
E++A A ARR SS+ S PP RKPP + ++R L P N P
Sbjct: 10 EAEADLQALARRFSFSSSSSPS-PSPSPPSSSRKPPLPPRRSPQKRPGLPTIPENGPPAG 68
Query: 421 LAQLPMQSTPQSTPST 468
+A TP++
Sbjct: 69 MATATATPKRTRTPTS 84
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 295 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTP 450
G S+LP RR R+PP RRR +P +PP LP ++P
Sbjct: 10 GTSSSSSSLPSRRRRRPP---PRLGRRRGGDDQQPPHPPKASSEALPCAASP 58
>04_03_1017 + 21747044-21748051
Length = 335
Score = 30.7 bits (66), Expect = 1.7
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Frame = +1
Query: 322 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQST-------PQSTPSTRNFR 480
PPRR P T RR AS P +PP + Q T P TPST
Sbjct: 212 PPRRAASPDYSPSTPPRRAASPDYTPMSPPRRAASPDYTQMTPPRRAASPDYTPSTPPPP 271
Query: 481 RCRLQQEKLRTPPTKPXLXGXXXLTLP 561
R TPP+ P T+P
Sbjct: 272 RAASPDYTPSTPPSSPLPSAAESFTVP 298
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 311 RATCRREGTGSRPRCRRPGQEGGRAYWWSREIRQRC 418
R R+ G G R R RR G GG A W R+ RC
Sbjct: 47 RRPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARC 82
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 29.9 bits (64), Expect = 2.9
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +1
Query: 226 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRRH---RKP--PTL*KTRSRRRASLL 390
QK AH + + H+ S RR+ S L P+ R P L T A+
Sbjct: 43 QKVCRCQPAHTLGPPLKRHIRSKSGRRVSSQLQPKEKEAVRSPCDVILQCTTVGYSAADK 102
Query: 391 VEPRNPPTMLLAQLPMQSTPQSTPST 468
PR P T LLA S+P S T
Sbjct: 103 AAPRRPTTSLLALATAASSPSSAEVT 128
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/84 (32%), Positives = 35/84 (41%)
Frame = +1
Query: 262 ASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQ 441
A R ST R + P RR PPT RSR R+ P PP Q P
Sbjct: 30 ARTPRAPFPSTSRSSNPYSFPDRR--PPPT---PRSRSRS-----PLPPPEQQKQQQPPP 79
Query: 442 STPQSTPSTRNFRRCRLQQEKLRT 513
+TP P R+ R +++ +RT
Sbjct: 80 TTPPPAPRRRDPRYAGVRRGDVRT 103
>01_05_0602 + 23577328-23579805
Length = 825
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 313 SNLP-PRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCR 489
++LP P H +P +RS RR + P PP L ++L +PS R+ R R
Sbjct: 2 ASLPLPALHHEPLL---SRSHRR----LPPSPPPPPLPSRLAAAHPSAPSPSPRDDERLR 54
Query: 490 LQQEKLRT 513
L+ E+LR+
Sbjct: 55 LRAEELRS 62
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 295 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPST 468
G +++ L ++ ++P T RSRRR L + P+ T L LP+ P S PS+
Sbjct: 5 GPPSLRAGLQQQQQQQPGT--PGRSRRRPDLTLPLPQRDLTSLAVPLPLPLPPSSAPSS 61
>01_01_0650 - 4948852-4950012
Length = 386
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/99 (24%), Positives = 36/99 (36%)
Frame = +1
Query: 319 LPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQ 498
L P R+R P T RRR + +L AQ + S+P ++ L++
Sbjct: 147 LHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAESYDGSPLRR 206
Query: 499 EKLRTPPTKPXLXGXXXLTLPXIPCRXPXTIPXKVPXSA 615
+ + TK + TL P P P P A
Sbjct: 207 QAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGA 245
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 322 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQ-Q 498
PP+ KPP + R A+ P+ P ++ P Q P + + R+ +
Sbjct: 68 PPKHPGKPPKDIQEVPSRAAAAAAAPKAQPAQVIQAPPPQPPPSESIQIETGKEHRITFR 127
Query: 499 EKLRTPPTKP 528
E+ PP P
Sbjct: 128 EQQHQPPQPP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,979
Number of Sequences: 37544
Number of extensions: 326433
Number of successful extensions: 1059
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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