Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_B08
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 38 0.013
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 34 0.16
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 33 0.21
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 31 1.5
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 31 1.5
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 1.5
AC199158-7|ABO33284.1| 217|Caenorhabditis elegans Hypothetical ... 29 4.6
AC199158-3|ABO33287.1| 217|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +1
Query: 178 YSVILINVLCFFINKTQKCSAESQAHFVASARRLHLSSTGRRRMQSN 318
YSV L N CF I KT+K + ++ + + SA + ++TG+ +++S+
Sbjct: 594 YSVTLDNTTCFPILKTRKATLKNAVNLIKSAEEKYQAATGKMKLESH 640
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 226 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRR----HRKPPTL*KTRSRRRASLLV 393
+K +ES +A + S++ R +S LP R + PPT + R S
Sbjct: 66 RKHPSESGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAE 125
Query: 394 EPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQEKLRTPPTKPXL 534
E + + ++ ++STP STP+ ++ + R + +K TPP + L
Sbjct: 126 EVE----VKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKSL 168
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 226 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRR----HRKPPTL*KTRSRRRASLLV 393
+K +ES +A + S++ R +S LP R + PPT + R S
Sbjct: 66 RKHPSESGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAE 125
Query: 394 EPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQEKLRTPPTKPXL 534
E + + ++ ++STP STP+ ++ + R + +K TPP + L
Sbjct: 126 EVE----VKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKSL 168
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 226 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRR----HRKPPTL*KTRSRRRASLLV 393
+K +ES +A + S++ R +S LP R + PPT + R S
Sbjct: 66 RKHPSESGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAE 125
Query: 394 EPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQEKLRTPPTKPXL 534
E + + ++ ++STP STP+ ++ + R + +K TPP + L
Sbjct: 126 EVE----VKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRRKSL 168
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 340 KPPT-L*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQEKLRTP 516
KPP+ L KT S + AS + E + + A + STP+ TR + +Q++ +TP
Sbjct: 2897 KPPSALSKTESLKEASNIQESASTTRVQPALVVSHSTPEPVQLTRMAAAKKSEQKEYKTP 2956
Query: 517 PTKPXLXGXXXLT 555
KP +T
Sbjct: 2957 VAKPKATAPPPIT 2969
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 9 LITDLTIGNSLRFLVDSSTVS*TLEVFRSPHFNRSVVGSPV-SVLLKYRKI*KSR*KLFS 185
LI + I N + S T + +E R+P FNR S + ++ Y KI + F
Sbjct: 1059 LIKTIIISNGIESKTLSCTAAEHIEATRNPEFNRPAEFSDIQKTVVDYNKIEGASLNTFE 1118
Query: 186 DLNKRVVL 209
LN+++ L
Sbjct: 1119 ALNEKMAL 1126
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 9 LITDLTIGNSLRFLVDSSTVS*TLEVFRSPHFNRSVVGSPV-SVLLKYRKI*KSR*KLFS 185
LI + I N + S T + +E R+P FNR S + ++ Y KI + F
Sbjct: 5905 LIKTIIISNGIESKTLSCTAAEHIEATRNPEFNRPAEFSDIQKTVVDYNKIEGASLNTFE 5964
Query: 186 DLNKRVVL 209
LN+++ L
Sbjct: 5965 ALNEKMAL 5972
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 289 STGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPS 465
S RRR S P RR R PP +RSR + R+PP A+ + +P
Sbjct: 116 SPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPP---AKRRRDQSRSKSPP 172
Query: 466 TRNFRRCRLQQEKLRTPPTK 525
RN+R Q+++ +PP +
Sbjct: 173 RRNYR----QRQRSGSPPVR 188
>AC199158-7|ABO33284.1| 217|Caenorhabditis elegans Hypothetical
protein AC8.11 protein.
Length = 217
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 286 SSTGRRRMQSNLPPRRH-RKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQST 459
SS +++Q N P + H R+P TRS++R S P P ++ Q ++++P ST
Sbjct: 112 SSLSYKKVQ-NKPEQSHGRRPKRKINTRSQKRFSPSPSPVRPRKSMILQPLLKNSPVST 169
>AC199158-3|ABO33287.1| 217|Caenorhabditis elegans Hypothetical
protein AC8.4 protein.
Length = 217
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 286 SSTGRRRMQSNLPPRRH-RKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQST 459
SS +++Q N P + H R+P TRS++R S P P ++ Q ++++P ST
Sbjct: 112 SSLSYKKVQ-NKPEQSHGRRPKRKINTRSQKRFSPSPSPVRPRKSMILQPLLKNSPVST 169
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 286 SSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTP 462
S + RRR PRR + P R RR S R+PP + P Q + Q P
Sbjct: 475 SRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPP--PRRPRQDSEQQAP 531
>Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical
protein F23D12.5 protein.
Length = 867
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 325 PRRHRKPPTL*KTRSRRRASLLVEPRN 405
P R RKP TL +T+S++R S P N
Sbjct: 206 PSRKRKPETLIETKSKKRKSARGRPSN 232
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 400 RNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQEKLRTPPTKP 528
R PT+ A L + TP TP T +FR Q PP P
Sbjct: 333 RTLPTLPKAVLA-KPTPMQTPMTPSFRGTNAAQSPANAPPRPP 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,941
Number of Sequences: 27780
Number of extensions: 263588
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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