Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_B07
(922 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 2.3
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 29 5.2
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 29 6.9
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.1
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 9.1
07_01_0626 - 4681826-4682707 28 9.1
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 9.1
01_01_1008 - 7987936-7988628,7988923-7989102 28 9.1
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 739 QREL*ESATLPEGRKAD-RYPVSGRXRNRRAHEGASRGKRLVS 614
QREL AT P D R ++GR + RR + A+R +R VS
Sbjct: 32 QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 522 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLEAPSCALLFRXL--PLTGYLSA 695
CWR + T D Q + +KD P + PSC L+F L PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 696 F 698
F
Sbjct: 343 F 343
>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 903 PRCICTRAAAMAXIVFTGWTQ-DDSYRIRRS 814
P C+C R + + GWT+ SYR RR+
Sbjct: 1728 PDCLCNRVIFLTFLPKYGWTRSSSSYRARRN 1758
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 646 RALSCSXPCRLPDTCPPFSLREAWRFLIAHA 738
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>07_01_0626 - 4681826-4682707
Length = 293
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 795 PPVQPDRCALSGNYRLESXR*XRXSPWQQPW 887
PPV P R A+ Y+ E R PW PW
Sbjct: 220 PPVSPWRAAIPW-YKAEMTLGYRPLPWHDPW 249
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 565 QKSTLKSEVAKPDRTIKIPGVXP-WKLPRALSCSXPCRLPDTCPPFSLRE 711
Q L+ V P RT+ G + P L+C PC L CP +L +
Sbjct: 158 QNINLQDAVNFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNK 207
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 725 RKRHASRREKGGQVSGKRQGSEQESARGSFQGXTPG 618
R R RR GG+V+G+ + RG+++G G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,084,187
Number of Sequences: 37544
Number of extensions: 548437
Number of successful extensions: 1667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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