Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B06
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    99   8e-22
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    29   1.3  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.0  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   4.0  

>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 99.1 bits (236), Expect = 8e-22
 Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
 Frame = +3

Query: 66  AEEFGNXXXLEHLWAAKAIEYSDIHFNVLCSVDMRWLQLTPHDDLIYTTFRQDFPDLN-- 239
           AE   N   +E  +A KA+E + I++++L       L+LT +DD I+      FP+    
Sbjct: 8   AENAENAAEIEMQFAVKAVEQAQIYWSLLEMRKGSELKLTKYDDEIFEDLINTFPEFKDP 67

Query: 240 --VSNVKEHEIKSNVNKVKWRMFCEKFKNIVEDYSFGTLLRVDCKGDYSERNTMLVPRVQ 413
              S V E E+KS   K  WR F  +++  V+DY+FGTLLR+    +Y +  T+ VPR+Q
Sbjct: 68  KTASFVNEDEMKSAKGKAAWRPFLMRYEKKVDDYNFGTLLRIKNTDEYEQETTIFVPRMQ 127

Query: 414 FYAIEIARNRENLNNEVKR 470
           F A EIARNR  LN+ +K+
Sbjct: 128 FLAYEIARNRYGLNDWIKK 146


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 138 HFNVLCSVDMRWLQLTPHDDLIYTTFRQDFPDLNVSNVKEHEIK 269
           HFN   S D      +PH+ L+ TTF+  FP ++V +   + +K
Sbjct: 144 HFNQNSSKD------SPHEALLTTTFQNMFPPISVQHTNINSVK 181


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 372 DYSERNTMLVPRVQFYAIEIARNRENLNNEVKRLFKCS 485
           +   +N M    +  Y  E+  N+E LNNE  +L+ C+
Sbjct: 107 ELERQNCMREDGLVKYTNELLLNKETLNNEALKLYSCA 144


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +3

Query: 183 TPHDDLIYTTFRQDFPDLNVSNVKEHEIKSNVNKVKWRMFCEKFKNIVEDYSFGTLLRVD 362
           T  D+LIY  F  DF  LNVS++    +  +    K R   +K K IV   S  T LR +
Sbjct: 40  TIDDELIYNPFYHDFGPLNVSHLIRFAVIVHGIMGKHRQ-AKKSKAIVLYSSTDTRLRAN 98


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 60  RPAEEFGNXXXLEH-LWAAKAIEYSDIHFNVLCSVDMRWLQLT 185
           +P+ E+ N    +  +WAA A++ ++ +F+   S +  WL+LT
Sbjct: 99  QPSFEYFNLGNDDQGMWAAAAMDAAEANFSPPNSTEHSWLELT 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,881
Number of Sequences: 5004
Number of extensions: 53102
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)