Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B05
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    40   7e-04
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    39   0.001
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    35   0.020

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 551 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 712
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A+EL+
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELD 463



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 572 EAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 712
           E I     AI+L+P  A  + ++ Q    L   N CI  C  A E++
Sbjct: 451 ECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +2

Query: 557 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSALLQ 733
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+LEL+ ++  +Q
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDPNNTYIQ 112


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 551 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 724
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +    + D   +  +  D  
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVP 93

Query: 725 LLQS 736
             QS
Sbjct: 94  KTQS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,273
Number of Sequences: 5004
Number of extensions: 46263
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)