Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B03
         (1040 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   3.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.5  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   7.2  

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 749  PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPPP 862
            PPPPPP                     P    PPPPPP
Sbjct: 1358 PPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPP 1395


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 535 PPXXXXFFXXPPXKKXXPPPPXXXXKKXXGXXXXXXXXXGGXGPPPP 675
           PP    F   PP     PPPP        G         GG  PPPP
Sbjct: 67  PPVPNGFIPPPPGPGGIPPPP----PMFAGGIPPPPPMMGGIPPPPP 109


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 749 PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPPP 862
           PPPPPP                     P    PPPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 749 PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPPP 862
           PPPPPP                     P    PPPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 749 PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPPP 862
           PPPPPP                     P    PPPPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 749 PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPP 859
           PPPPPP  F                  P    PPPPP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 749 PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPP 859
           PPPPPP  F                  P    PPPPP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 749 PPPPPPXFFFXXXXXXXXXXXXXXXXXPXXXXPPPPPP 862
           PPPPPP                     P    PPPPPP
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,434
Number of Sequences: 27780
Number of extensions: 216081
Number of successful extensions: 2502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2762030832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)