Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B02
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   2.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   2.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   2.2  
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 26.6 bits (56), Expect(2) = 2.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 396 GGXPPPPPXXGG 431
           GG PPPPP  GG
Sbjct: 756 GGPPPPPPPPGG 767



 Score = 24.2 bits (50), Expect(2) = 10.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 396 GGXPPPPPXXG 428
           GG PPPPP  G
Sbjct: 740 GGPPPPPPPGG 750



 Score = 21.8 bits (44), Expect(2) = 10.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 393 GGGXPPPPP 419
           GG  PPPPP
Sbjct: 724 GGPPPPPPP 732



 Score = 21.8 bits (44), Expect(2) = 2.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 393 GGGXPPPPP 419
           GG  PPPPP
Sbjct: 740 GGPPPPPPP 748


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 26.6 bits (56), Expect(2) = 2.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 396 GGXPPPPPXXGG 431
           GG PPPPP  GG
Sbjct: 756 GGPPPPPPPPGG 767



 Score = 24.2 bits (50), Expect(2) = 10.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 396 GGXPPPPPXXG 428
           GG PPPPP  G
Sbjct: 740 GGPPPPPPPGG 750



 Score = 21.8 bits (44), Expect(2) = 10.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 393 GGGXPPPPP 419
           GG  PPPPP
Sbjct: 724 GGPPPPPPP 732



 Score = 21.8 bits (44), Expect(2) = 2.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 393 GGGXPPPPP 419
           GG  PPPPP
Sbjct: 740 GGPPPPPPP 748


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 26.6 bits (56), Expect(2) = 2.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 396 GGXPPPPPXXGG 431
           GG PPPPP  GG
Sbjct: 339 GGPPPPPPPPGG 350



 Score = 21.8 bits (44), Expect(2) = 2.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 393 GGGXPPPPP 419
           GG  PPPPP
Sbjct: 307 GGPPPPPPP 315


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 393 GGGXPPPPPXXGGG 434
           GGG P PPP  GGG
Sbjct: 268 GGGYPQPPPQQGGG 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,325,006
Number of Sequences: 27780
Number of extensions: 68704
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)