Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_B01
         (960 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   8.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 839 PXXPAXAPTPXPPPXXPVHXPPPPXXPPPXPHXPPP 946
           P     +P     P  P         PPP PH  PP
Sbjct: 711 PSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 839 PXXPAXAPTPXPPPXXPVHXPPPPXXPPPXPHXPPP 946
           P     +P     P  P         PPP PH  PP
Sbjct: 603 PSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPP 638


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 875 PPXXPVHXPPPPXXPP 922
           PP  P + PPP    P
Sbjct: 21  PPHNPAYSPPPSYCDP 36


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 848 PAXAPTPXPPP 880
           P   PTP PPP
Sbjct: 95  PTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,997
Number of Sequences: 336
Number of extensions: 1644
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27099446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)