Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A22
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    35   0.015
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.026
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.026
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   2.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.8  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   6.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 587  PWGPXXPKXGPPPPXGAXXGXXPPRGPPPPXP 682
            P  P  P   PPPP        PP  PPPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 408  PPPPPGEGGXXXFGXPXPXPPPRAPXP 488
            PPPPP          P P  PP AP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 24.2 bits (50), Expect(2) = 0.77
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 759  PPGXAPPGXA-PXXXPPPP 812
            PP  APP  A P   PPPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPP 1734



 Score = 23.4 bits (48), Expect(2) = 0.77
 Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
 Frame = +3

Query: 564  GGXPPGXXLGXPXAXX--GGPPPXXXPXXGXFPXGAPPPP 677
            GG  P   +  P        PP    P     P   PPPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 24/71 (33%), Positives = 24/71 (33%)
 Frame = -2

Query: 508 GPPXXPXGXGARGGGXGXGXPKXXXPPSPGGGGGXXXXRKXXXHGXPGGGGXXXXPRPVG 329
           GPP  P G G  GG  G G          GGG G          G PGG G        G
Sbjct: 199 GPPPGPGGFGGFGGFGGEGH-HHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257

Query: 328 XQXXGAXSGGH 296
               G   GGH
Sbjct: 258 PGGFGGGPGGH 268



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = -2

Query: 487 GXGARGGGXGXGXPKXXXPPSPGG-GGGXXXXRKXXXHGXPGGGGXXXXPRPVGXQXXGA 311
           G G  G G G G P    PP PGG GG      +   HG  GG G        G    G 
Sbjct: 187 GGGFGGFGGGSGGP----PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242

Query: 310 XSGG 299
             GG
Sbjct: 243 GPGG 246



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/38 (44%), Positives = 17/38 (44%)
 Frame = -3

Query: 681 GXGGGGPLGGXXPXXAPXGGGGPXXGXXGPQGXFRGXP 568
           G  GGGP GG      P G GG   G  G  G F G P
Sbjct: 224 GGFGGGP-GGFE--GGPGGFGGGPGGFGGGLGGFGGGP 258



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -3

Query: 681 GXGGGGPLGGXXPXXAPXGG-GGPXXGXXGPQGXFRGXP 568
           G G GG  GG        GG GG   G  G  G F G P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +3

Query: 360 PPPGXPXXXFFRXXXXPPPPPGEGGXXXFGXPXPXPPPRAPXPXG 494
           P P  P          PPPPPG  G    G P P PPP A    G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGA---GPPPPPPPPPAVSAGG 789



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = +2

Query: 575 PRKXPWGPXXPKXG---PPPPXGAXXGXXPPRGPPPP 676
           P   P  P  P  G   PPPP     G  PP  PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
 Frame = +3

Query: 312 APXXCXPTGRGXXXXPPPPGXPXXXFFRXXXXPPPPPG-EGGXXXFGXPXPXPPP 473
           AP    P        PPPP  P          PPPPP    G   +  P P   P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 753 GXPPGXAPPGXAPXXXPPPP 812
           G PP   PPG A    PPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 357 PPPPGXPXXXFFRXXXXPPPPPGEGGXXXFGXPXPXPPP 473
           PPPP             P PPP        G P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP----IMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 614 GPPPPXGAXXGXXPPRGPPPPXP 682
           G PPP     G  PP  PPPP P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 605 PKXGPPPPXGAXXGXXPPRGPPPPXPXXKK 694
           P   PPPP        P + PPPP P   K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 408 PPPPPGEGGXXXFGXPXPXPPP 473
           PPPPP   G      P P PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 759 PPGXAPPGXAPXXXPPPP 812
           PP   PPG  P   PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 357 PPPPGXPXXXFFRXXXXPPPPPGEG 431
           PPPP  P    F     PPPPP  G
Sbjct: 9   PPPPPPPPG--FEPPSQPPPPPPPG 31


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect(2) = 1.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 808 GGGXXXGAXPGGAXPGG 758
           GG    G  PGG  PGG
Sbjct: 438 GGSFPGGGFPGGGFPGG 454



 Score = 22.6 bits (46), Expect(2) = 1.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 673 GGGAPXGXXPXXGXXXGGGPP 611
           GGG P G     G   GGG P
Sbjct: 448 GGGFPGGSYNSQGFGMGGGFP 468


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect(2) = 2.8
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 762  PGXAPPGXAPXXXPPPPXXXXXXXPXSPP 848
            P  APP  AP   PP P       P   P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107



 Score = 21.0 bits (42), Expect(2) = 2.8
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 576  PGXXLGXPXAXXGGPPPXXXPXXGXFPXGAPPPP 677
            P    G P A    P P         P GAPP P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 333 TGRGXXXXPPPPGXPXXXFFRXXXXPPPPPGEG 431
           +  G    PPPP  P   F++    P P   +G
Sbjct: 300 SANGGLPPPPPPPPPSNDFWKDSNEPAPADNKG 332


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = +2

Query: 569 GXPRKXPWGPXXPKXGPPPPXGAXXGXX-PPRGP-PPPXP 682
           G P   P  P  P   PP P G       PP  P PPP P
Sbjct: 442 GAPAAPPLPPSAP-IAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 623 PPXGAXXGXXPPRGPPPPXPXXK 691
           PP        P  GPPPP P  K
Sbjct: 11  PPPNDSRSSTPATGPPPPIPKIK 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,650
Number of Sequences: 5004
Number of extensions: 31891
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)