Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A21
         (1019 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.60 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.60 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 407 PPPPPXXXFXXXXGGXPPPPP 469
           PPPPP   F       PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 407 PPPPPXXXFXXXXGGXPPPPP 469
           PPPPP           PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 689 PXXPPPPXPXXXXXXXXXXPXXPPP 763
           P  PPPP P          P  PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 587 PPPPPXXXXXXXXKKKXXPXPPPPXXXKK 501
           PPPPP         +   P PPPP   KK
Sbjct: 9   PPPPPPPPGFEPPSQP--PPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = -2

Query: 400 KXPPPXXGGGXXXXXXPXXXGGXXXFXXXGGXPPXXAPPXKRGXKPXXPPP 248
           K PPP           P            GG PP   PP   G  P  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 407 PPPPPXXXFXXXXGGXPPPPP 469
           PPPPP        G  PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 852 PXPXXXXGXGGPPPPPP 802
           P P    G G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 852 PXPXXXXGXGGPPPPPP 802
           P P      GGPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 374 PPXXGGGXFXXPPPPPXXXFXXXXGGXPPPPP 469
           PP    G    PPPPP         G PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPP----GVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 407 PPPPPXXXFXXXXGGXPPPPP 469
           PPPPP           PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +2

Query: 683 KTPXXPPPPXPXXXXXXXXXXPXXPPPXXXXXXXXXXXXXGGGGGGPPXP 832
           K+P  PPPP            P  PP              G  G GPP P
Sbjct: 730 KSPP-PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 407 PPPPPXXXFXXXXGGXPPPPP 469
           PPPPP           PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 852 PXPXXXXGXGGPPPPPP 802
           P P       GPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,595
Number of Sequences: 5004
Number of extensions: 36719
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)